CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG94751
KRH06774
KRH10294
KRH23029
KRH24840
KRH29844
KRH34962
KRH39632
KRH52586
KRH61926
KRH70104
KRH74288

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	KRG91819	AT1G34430.1	21798944
AT2G47400.1	KRH34962	AT1G34430.1	21798944
AT2G47400.1	KRH10294	AT3G46090.1	17259181
AT2G47400.1	KRH23029	AT3G46090.1	17259181
AT2G47400.1	KRH24840	AT3G46090.1	17259181
AT2G47400.1	KRH29844	AT3G46090.1	17259181
AT3G62410.1	KRH52586	AT1G22920.1	21798944
AT3G62410.1	KRH61926	AT1G22920.1	21798944
AT3G62410.1	KRH39632	AT1G32060.1	17947231
AT3G62410.1	KRH74288	AT1G32060.1	17947231
AT3G62410.1	KRG94751	AT3G26650.1	17947231
AT3G62410.1	KRH06774	AT3G26650.1	17947231
AT3G62410.1	KRH70104	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68260	Soybean	plastid	60.0	75.0
KRH69219	Soybean	plastid	44.24	57.03
Bra003499.1-P	Field mustard	plastid	42.42	54.26
CDX67892	Canola	plastid	42.42	54.26
CDY25110	Canola	plastid	42.42	54.26
AT2G47400.1	Thale cress	plastid	40.61	54.03
CDY51422	Canola	plastid	40.61	54.03
Bra021396.1-P	Field mustard	plastid	40.0	53.23
KRH31794	Soybean	plastid	41.21	52.71
AT3G62410.1	Thale cress	plastid	41.82	52.67
CDX80101	Canola	plastid	40.0	52.38
CDY55379	Canola	plastid	40.0	52.38
CDY11420	Canola	plastid	41.21	52.31
Bra007678.1-P	Field mustard	plastid	41.21	52.31
CDX95723	Canola	plastid	39.39	51.59
CDX76635	Canola	plastid	39.39	50.39
GSMUA_Achr11P...	Banana	plastid	39.39	50.39
Os03t0306800-01	Rice	extracellular	40.0	50.38
GSMUA_Achr1P13010_001	Banana	plastid	38.79	49.61
Bra004459.1-P	Field mustard	plastid	38.18	49.61
GSMUA_Achr11P...	Banana	plastid	38.18	48.84
CDY27491	Canola	plastid	36.97	48.8
CDX83329	Canola	plastid	36.97	48.41
Bra000451.1-P	Field mustard	plastid	36.97	48.41
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	36.36	48.39
PGSC0003DMT400018798	Potato	cytosol	36.36	47.62
PGSC0003DMT400023336	Potato	plastid	35.15	46.77
GSMUA_Achr8P10530_001	Banana	plastid	35.76	46.09
TraesCS2B01G048200.1	Wheat	plastid	34.55	45.24
TraesCS2A01G035100.1	Wheat	plastid	34.55	45.24
Solyc06g009630.1.1	Tomato	plastid	34.55	44.88
EER94980	Sorghum	plastid	35.15	44.62
TraesCS4D01G185400.1	Wheat	plastid	35.15	44.62
TraesCS4B01G184400.1	Wheat	plastid	35.15	44.62
TraesCS2D01G034400.1	Wheat	plastid	33.94	44.44
Zm00001d028880_P001	Maize	plastid	33.94	44.44
TraesCS4A01G120600.1	Wheat	plastid	34.55	43.85
Solyc01g079470.2.1	Tomato	plastid	32.73	43.55
VIT_01s0026g02480.t01	Wine grape	extracellular	49.7	41.62
EER88061	Sorghum	plastid	31.52	40.31
Zm00001d044925_P001	Maize	plastid	33.94	40.0
HORVU4Hr1G053940.2	Barley	plastid	35.76	37.11

Protein Annotations

EMBL:ACUP02012155	EnsemblPlants:KRG96526	EnsemblPlantsGene:GLYMA_19G216300	EntrezGene:100812168	InterPro:DUF_CP12	PANTHER:PTHR33921
PANTHER:PTHR33921:SF10	PFAM:PF02672	ProteinID:KRG96526	ProteinID:KRG96526.1	SMART:SM01093	UniParc:UPI00023DD634
UniProt:I1NBC5	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:46934773..46935893

Molecular Weight (calculated)

18246.4 Da

IEP (calculated)

6.239

GRAVY (calculated)

-0.704

Length

165 amino acids

Sequence
(BLAST)

001: MCTEILPSHS YNLLLRHHHK PPSTETEAEK NQRMATMTGV SLSCPRVFFN ASASPQNAHA VKFSLPPSQA VRPGSIKLGR VMRIRPVRAA PERISEKVEE
101: SIKNAQEACA GDPTSGECVA AWDEVEELSA AASHARDKQK EKDSDPLENY CKDNPETIEC KTFED

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.