CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG94751
KRH06774
KRH10294
KRH23029
KRH24840
KRH29844
KRH34962
KRH39632
KRH52586
KRH61926
KRH70104
KRH74288

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	KRG91819	AT1G34430.1	21798944
AT2G47400.1	KRH34962	AT1G34430.1	21798944
AT2G47400.1	KRH10294	AT3G46090.1	17259181
AT2G47400.1	KRH23029	AT3G46090.1	17259181
AT2G47400.1	KRH24840	AT3G46090.1	17259181
AT2G47400.1	KRH29844	AT3G46090.1	17259181
AT3G62410.1	KRH52586	AT1G22920.1	21798944
AT3G62410.1	KRH61926	AT1G22920.1	21798944
AT3G62410.1	KRH39632	AT1G32060.1	17947231
AT3G62410.1	KRH74288	AT1G32060.1	17947231
AT3G62410.1	KRG94751	AT3G26650.1	17947231
AT3G62410.1	KRH06774	AT3G26650.1	17947231
AT3G62410.1	KRH70104	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96526	Soybean	nucleus	75.0	60.0
Bra003499.1-P	Field mustard	plastid	53.03	54.26
CDX67892	Canola	plastid	53.03	54.26
CDY25110	Canola	plastid	53.03	54.26
KRH31794	Soybean	plastid	52.27	53.49
KRH69219	Soybean	plastid	50.76	52.34
Bra007678.1-P	Field mustard	plastid	51.52	52.31
CDY11420	Canola	plastid	51.52	52.31
CDX76635	Canola	plastid	50.0	51.16
GSMUA_Achr11P...	Banana	plastid	50.0	51.16
AT3G62410.1	Thale cress	plastid	50.76	51.15
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	47.73	50.81
AT2G47400.1	Thale cress	plastid	46.97	50.0
GSMUA_Achr1P13010_001	Banana	plastid	48.48	49.61
CDY51422	Canola	plastid	45.45	48.39
CDY27491	Canola	plastid	45.45	48.0
TraesCS2D01G034400.1	Wheat	plastid	45.45	47.62
TraesCS2B01G048200.1	Wheat	plastid	45.45	47.62
CDX83329	Canola	plastid	45.45	47.62
TraesCS2A01G035100.1	Wheat	plastid	45.45	47.62
Bra000451.1-P	Field mustard	plastid	45.45	47.62
Bra021396.1-P	Field mustard	plastid	44.7	47.58
Solyc06g009630.1.1	Tomato	plastid	45.45	47.24
Bra004459.1-P	Field mustard	plastid	45.45	47.24
CDY55379	Canola	plastid	43.94	46.03
Zm00001d028880_P001	Maize	plastid	43.94	46.03
CDX95723	Canola	plastid	43.94	46.03
CDX80101	Canola	plastid	43.94	46.03
GSMUA_Achr8P10530_001	Banana	plastid	43.94	45.31
Solyc01g079470.2.1	Tomato	plastid	42.42	45.16
Os03t0306800-01	Rice	extracellular	44.7	45.04
GSMUA_Achr11P...	Banana	plastid	43.18	44.19
EER94980	Sorghum	plastid	43.18	43.85
TraesCS4A01G120600.1	Wheat	plastid	42.42	43.08
TraesCS4D01G185400.1	Wheat	plastid	42.42	43.08
PGSC0003DMT400018798	Potato	cytosol	40.91	42.86
PGSC0003DMT400023336	Potato	plastid	40.15	42.74
TraesCS4B01G184400.1	Wheat	plastid	41.67	42.31
Zm00001d044925_P001	Maize	plastid	42.42	40.0
EER88061	Sorghum	plastid	37.12	37.98
VIT_01s0026g02480.t01	Wine grape	extracellular	52.27	35.03
HORVU4Hr1G053940.2	Barley	plastid	41.67	34.59

Protein Annotations

EMBL:ACUP02002105	EnsemblPlants:KRH68260	EnsemblPlantsGene:GLYMA_03G219400	EntrezGene:100803973	InterPro:DUF_CP12	PANTHER:PTHR33921
PANTHER:PTHR33921:SF10	PFAM:PF02672	ProteinID:KRH68260	ProteinID:KRH68260.1	SMART:SM01093	UniParc:UPI00018C70FE
UniProt:A0A0R4J2Y5	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:42292043..42293160

Molecular Weight (calculated)

14473.0 Da

IEP (calculated)

5.003

GRAVY (calculated)

-0.535

Length

132 amino acids

Sequence
(BLAST)

001: MATMTGVSLS SPRVFFNASP SPQNTYAVKF AVPLSQGMRL GSVRLGRVMR IRPVRAAPER ISEKVEESIK NAQEACAGDP TSGECVAAWD EVEELSAAAS
101: HAKYKQKEKD SDPLETYCKD NPETIECKTF ED

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.