Factsheet for Os01t0303000-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

extracellular: 23159799
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0459500-02
Os04t0596900-00
Os04t0654700-02
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Os12t0182200-01	AT1G34430.1	21798944
AT3G62410.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G62410.1	Os04t0596900-00	AT1G32060.1	17947231
AT3G62410.1	Os04t0459500-02	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G048200.1	Wheat	plastid	72.58	71.43
TraesCS2A01G035100.1	Wheat	plastid	72.58	71.43
TraesCS2D01G034400.1	Wheat	plastid	71.77	70.63
GSMUA_Achr8P10530_001	Banana	plastid	62.9	60.94
GSMUA_Achr11P...	Banana	plastid	62.9	60.47
EER88061	Sorghum	plastid	60.48	58.14
CDY27491	Canola	plastid	53.23	52.8
Bra003499.1-P	Field mustard	plastid	54.84	52.71
CDX67892	Canola	plastid	54.84	52.71
CDY25110	Canola	plastid	54.84	52.71
Os03t0306800-01	Rice	extracellular	54.84	51.91
CDX76635	Canola	plastid	53.23	51.16
Bra007678.1-P	Field mustard	plastid	53.23	50.77
CDY11420	Canola	plastid	53.23	50.77
AT3G62410.1	Thale cress	plastid	53.23	50.38
CDX83329	Canola	plastid	50.81	50.0
Bra000451.1-P	Field mustard	plastid	50.81	50.0
Zm00001d044925_P001	Maize	plastid	55.65	49.29
AT2G47400.1	Thale cress	plastid	49.19	49.19
KRH31794	Soybean	plastid	50.81	48.84
Bra004459.1-P	Field mustard	plastid	50.0	48.82
KRH69219	Soybean	plastid	50.0	48.44
CDX95723	Canola	plastid	49.19	48.41
CDX80101	Canola	plastid	49.19	48.41
CDY51422	Canola	plastid	48.39	48.39
KRH68260	Soybean	plastid	50.81	47.73
CDY55379	Canola	plastid	48.39	47.62
Bra021396.1-P	Field mustard	plastid	47.58	47.58
Solyc06g009630.1.1	Tomato	plastid	47.58	46.46
PGSC0003DMT400023336	Potato	plastid	45.97	45.97
Solyc01g079470.2.1	Tomato	plastid	45.97	45.97
Os08t0513100-01	Rice	cytosol, nucleus	22.58	43.75
PGSC0003DMT400018798	Potato	cytosol	44.35	43.65
KRG96526	Soybean	nucleus	48.39	36.36
VIT_01s0026g02480.t01	Wine grape	extracellular	49.19	30.96

Protein Annotations

EMBL:AK058929	EMBL:AK102013	EnsemblPlants:Os01t0303000-02	EnsemblPlantsGene:Os01g0303000	EntrezGene:4325791	InterPro:DUF_CP12
PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672	ProteinID:BAB19776.1	ProteinID:BAB93161.1	ProteinID:BAF04744.1
ProteinID:BAS71733.1	ProteinID:EAZ11584.1	RefSeq:XP_015616280.1	SEG:seg	SMART:SM01093	UniParc:UPI00000ABC06
UniProt:Q9FP25	MapMan:35.1	:	:	:	:

Description

Similar to CP12 (Fragment). (Os01t0303000-02)

Coordinates

chr1:-:11202609..11203331

Molecular Weight (calculated)

12833.7 Da

IEP (calculated)

4.324

GRAVY (calculated)

-0.408

Length

124 amino acids

Sequence
(BLAST)

001: MASTLTNVGL STPAAAASSL VRPVAGAGRV VFPRVGRGGF AAVRASGPAT PPDISDKMSE SIDKAKEACA EDTASGECAA AWDEVEELSA AASHARDKLK
101: ETSDPLEAYC KDNPETDECR TYDN

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.