Factsheet for Bra007678.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra023235.1-P
Bra024548.1-P
Bra025219.1-P
Bra027469.1-P
Bra032939.1-P
Bra033861.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62410.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G62410.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G62410.1	Bra023235.1-P	AT1G32060.1	17947231
AT3G62410.1	Bra033861.1-P	AT1G32060.1	17947231
AT3G62410.1	Bra025219.1-P	AT3G26650.1	17947231
AT3G62410.1	Bra032939.1-P	AT3G26650.1	17947231
AT3G62410.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11420	Canola	plastid	100.0	100.0
Bra003499.1-P	Field mustard	plastid	82.31	82.95
AT3G62410.1	Thale cress	plastid	76.92	76.34
Bra021396.1-P	Field mustard	plastid	69.23	72.58
Bra004459.1-P	Field mustard	plastid	70.0	71.65
Bra000451.1-P	Field mustard	plastid	69.23	71.43
Solyc06g009630.1.1	Tomato	plastid	56.92	58.27
Solyc01g079470.2.1	Tomato	plastid	53.08	55.65
GSMUA_Achr1P13010_001	Banana	plastid	54.62	55.04
KRH69219	Soybean	plastid	53.08	53.91
GSMUA_Achr11P...	Banana	plastid	53.08	53.49
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	50.77	53.23
KRH31794	Soybean	plastid	52.31	52.71
TraesCS4B01G184400.1	Wheat	plastid	52.31	52.31
PGSC0003DMT400018798	Potato	cytosol	50.0	51.59
GSMUA_Achr8P10530_001	Banana	plastid	50.77	51.56
KRH68260	Soybean	plastid	52.31	51.52
Os03t0306800-01	Rice	extracellular	51.54	51.15
PGSC0003DMT400023336	Potato	plastid	48.46	50.81
TraesCS2A01G035100.1	Wheat	plastid	49.23	50.79
TraesCS2B01G048200.1	Wheat	plastid	49.23	50.79
TraesCS4D01G185400.1	Wheat	plastid	50.77	50.77
TraesCS2D01G034400.1	Wheat	plastid	48.46	50.0
TraesCS4A01G120600.1	Wheat	plastid	49.23	49.23
EER88061	Sorghum	plastid	47.69	48.06
Zm00001d028880_P001	Maize	plastid	46.15	47.62
EER94980	Sorghum	plastid	46.15	46.15
GSMUA_Achr11P...	Banana	plastid	45.38	45.74
Zm00001d044925_P001	Maize	plastid	45.38	42.14
KRG96526	Soybean	nucleus	52.31	41.21
HORVU4Hr1G053940.2	Barley	plastid	49.23	40.25
VIT_01s0026g02480.t01	Wine grape	extracellular	51.54	34.01
Bra015733.1-P	Field mustard	plastid	33.08	31.85

Protein Annotations

EnsemblPlants:Bra007678.1	EnsemblPlants:Bra007678.1-P	EnsemblPlantsGene:Bra007678	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9
PFAM:PF02672	SMART:SM01093	UniParc:UPI0000EC7D7F	UniProt:M4CTY4	MapMan:35.1	:

Description

AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding

Coordinates

chrA09:+:30365556..30365948

Molecular Weight (calculated)

14139.5 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.675

Length

130 amino acids

Sequence
(BLAST)

001: MATIATSLNI ATQRAVITSK SQPARLACPV RLNNPWKLGS RTNRLVSFRP VKSTPEGVIS DKVEKSIKDA KESCADDPVS GECVAAWDEV EELSAAASHA
101: RDKKKAGGSD PLEEYCKDNP ETDECRTYDN

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.