Factsheet for Zm00001d028880_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d002454_P002
Zm00001d003429_P001
Zm00001d023606_P005
Zm00001d025593_P001
Zm00001d025599_P001
Zm00001d025607_P001
Zm00001d038652_P003
Zm00001d041839_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT2G47400.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT2G47400.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT3G62410.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT3G62410.1	Zm00001d002454_P002	AT1G32060.1	17947231
AT3G62410.1	Zm00001d003429_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025593_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025599_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d025607_P001	AT3G26650.1	17947231
AT3G62410.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94980	Sorghum	plastid	75.4	73.08
TraesCS4A01G120600.1	Wheat	plastid	56.35	54.62
Os03t0306800-01	Rice	extracellular	56.35	54.2
TraesCS4D01G185400.1	Wheat	plastid	53.97	52.31
TraesCS4B01G184400.1	Wheat	plastid	53.17	51.54
CDY51422	Canola	plastid	50.0	50.81
CDX95723	Canola	plastid	50.79	50.79
CDY55379	Canola	plastid	50.79	50.79
CDX80101	Canola	plastid	50.79	50.79
GSMUA_Achr8P10530_001	Banana	plastid	51.59	50.78
Bra004459.1-P	Field mustard	plastid	50.79	50.39
CDX83329	Canola	plastid	50.0	50.0
Bra021396.1-P	Field mustard	plastid	49.21	50.0
Bra000451.1-P	Field mustard	plastid	50.0	50.0
AT2G47400.1	Thale cress	plastid	49.21	50.0
GSMUA_Achr11P...	Banana	plastid	50.79	49.61
CDY27491	Canola	plastid	48.41	48.8
CDX76635	Canola	plastid	47.62	46.51
CDY11420	Canola	plastid	47.62	46.15
Bra007678.1-P	Field mustard	plastid	47.62	46.15
CDY25110	Canola	plastid	46.03	44.96
CDX67892	Canola	plastid	46.03	44.96
AT3G62410.1	Thale cress	plastid	46.03	44.27
Bra003499.1-P	Field mustard	plastid	45.24	44.19
Solyc06g009630.1.1	Tomato	plastid	44.44	44.09
KRH68260	Soybean	plastid	46.03	43.94
PGSC0003DMT400018798	Potato	cytosol	42.86	42.86
HORVU4Hr1G053940.2	Barley	plastid	53.17	42.14
Zm00001d044925_P001	Maize	plastid	44.44	40.0
KRH69219	Soybean	plastid	40.48	39.84
KRH31794	Soybean	plastid	40.48	39.53
Solyc01g079470.2.1	Tomato	plastid	38.89	39.52
PGSC0003DMT400023336	Potato	plastid	37.3	37.9
KRG96526	Soybean	nucleus	44.44	33.94
VIT_01s0026g02480.t01	Wine grape	extracellular	45.24	28.93

Protein Annotations

EnsemblPlants:Zm00001d028880_P001	EnsemblPlants:Zm00001d028880_T001	EnsemblPlantsGene:Zm00001d028880	EntrezGene:103634557	InterPro:DUF_CP12	PANTHER:PTHR33921
PANTHER:PTHR33921:SF9	PFAM:PF02672	ProteinID:ONL97236.1	SMART:SM01093	UniParc:UPI000221AD34	UniProt:A0A1D6K0A0
MapMan:35.1	:	:	:	:	:

Description

Calvin cycle protein CP12-2 chloroplastic

Coordinates

chr1:+:49535063..49535443

Molecular Weight (calculated)

13693.0 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.433

Length

126 amino acids

Sequence
(BLAST)

001: MAISVTAVAA LPAFSAQRSL PQPSRQRVVA FIVVRPVRAH RRFVGVAASS PPTPPDLAKK VSESIKQAQE TCADDPVSGE CVAAWDEVEE LSAAASHLRD
101: RQKGADPLEE YCKDNPETDE CRTYED

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.