Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 7
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| cytosol:
22313117
extracellular: 22313117 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g009630.1.1 | Tomato | plastid | 71.43 | 70.87 |
| PGSC0003DMT400023336 | Potato | plastid | 65.08 | 66.13 |
| AT2G47400.1 | Thale cress | plastid | 53.17 | 54.03 |
| CDX80101 | Canola | plastid | 53.17 | 53.17 |
| CDY51422 | Canola | plastid | 51.59 | 52.42 |
| CDY55379 | Canola | plastid | 52.38 | 52.38 |
| Bra021396.1-P | Field mustard | plastid | 50.79 | 51.61 |
| CDY27491 | Canola | plastid | 50.79 | 51.2 |
| Bra004459.1-P | Field mustard | plastid | 51.59 | 51.18 |
| CDX95723 | Canola | plastid | 50.79 | 50.79 |
| CDX83329 | Canola | plastid | 50.0 | 50.0 |
| CDY11420 | Canola | plastid | 51.59 | 50.0 |
| Bra007678.1-P | Field mustard | plastid | 51.59 | 50.0 |
| Bra000451.1-P | Field mustard | plastid | 50.0 | 50.0 |
| AT3G62410.1 | Thale cress | plastid | 51.59 | 49.62 |
| CDY25110 | Canola | plastid | 50.0 | 48.84 |
| CDX67892 | Canola | plastid | 50.0 | 48.84 |
| Bra003499.1-P | Field mustard | plastid | 50.0 | 48.84 |
| KRH69219 | Soybean | plastid | 49.21 | 48.44 |
| GSMUA_Achr1P13010_001 | Banana | plastid | 49.21 | 48.06 |
| GSMUA_Achr8P10530_001 | Banana | plastid | 47.62 | 46.88 |
| GSMUA_Achr11P... | Banana | plastid | 46.83 | 45.74 |
| KRH31794 | Soybean | plastid | 46.83 | 45.74 |
| GSMUA_Achr11P... | Banana | plastid | 46.83 | 45.74 |
| Os03t0306800-01 | Rice | extracellular | 46.83 | 45.04 |
| CDX76635 | Canola | plastid | 46.03 | 44.96 |
| TraesCS4D01G185400.1 | Wheat | plastid | 46.03 | 44.62 |
| TraesCS4B01G184400.1 | Wheat | plastid | 46.03 | 44.62 |
| Os01t0303000-02 | Rice | extracellular, plasma membrane, plastid | 43.65 | 44.35 |
| TraesCS4A01G120600.1 | Wheat | plastid | 45.24 | 43.85 |
| Zm00001d028880_P001 | Maize | plastid | 42.86 | 42.86 |
| EER94980 | Sorghum | plastid | 43.65 | 42.31 |
| TraesCS2A01G035100.1 | Wheat | plastid | 42.06 | 42.06 |
| TraesCS2B01G048200.1 | Wheat | plastid | 42.06 | 42.06 |
| TraesCS2D01G034400.1 | Wheat | plastid | 42.06 | 42.06 |
| EER88061 | Sorghum | plastid | 42.06 | 41.09 |
| KRH68260 | Soybean | plastid | 42.86 | 40.91 |
| HORVU4Hr1G053940.2 | Barley | plastid | 47.62 | 37.74 |
| KRG96526 | Soybean | nucleus | 47.62 | 36.36 |
| PGSC0003DMT400025712 | Potato | plastid | 34.92 | 36.07 |
| Zm00001d044925_P001 | Maize | plastid | 39.68 | 35.71 |
| VIT_01s0026g02480.t01 | Wine grape | extracellular | 53.17 | 34.01 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018798 | EnsemblPlantsGene:PGSC0003DMG400007286 | EntrezGene:102594918 | InterPro:DUF_CP12 | PANTHER:PTHR33921 | PANTHER:PTHR33921:SF9 |
| PFAM:PF02672 | PGSC:PGSC0003DMG400007286 | RefSeq:XP_006355835.1 | SMART:SM01093 | UniParc:UPI000296D746 | UniProt:M1AB57 |
| MapMan:35.1 | : | : | : | : | : |
Description
CP12 [Source:PGSC_GENE;Acc:PGSC0003DMG400007286]
Coordinates
chr6:-:195064..195709
Molecular Weight (calculated)
13899.2 Da
IEP (calculated)
4.678
GRAVY (calculated)
-0.644
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIAGVSIT TPRISSDSPK IQPLKFPTLN SPWKKSGQFS YGRMYVVVPR VVPDKKLSDL VAESVKEAEE ACAEDPVSGE CKAAWDVVEE TSAAASHARD
101: RKKESDVLEN YCKDNPETDE CRTYDN
101: RKKESDVLEN YCKDNPETDE CRTYDN
001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N
Arabidopsis Description
CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.