Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G185400.1 | Wheat | plastid | 59.12 | 72.31 |
| TraesCS4B01G184400.1 | Wheat | plastid | 58.49 | 71.54 |
| TraesCS4A01G120600.1 | Wheat | plastid | 58.49 | 71.54 |
| Os03t0306800-01 | Rice | extracellular | 47.8 | 58.02 |
| Zm00001d028880_P001 | Maize | plastid | 42.14 | 53.17 |
| EER94980 | Sorghum | plastid | 43.4 | 53.08 |
| GSMUA_Achr8P10530_001 | Banana | plastid | 42.14 | 52.34 |
| CDX76635 | Canola | plastid | 42.14 | 51.94 |
| CDX67892 | Canola | plastid | 40.88 | 50.39 |
| CDY25110 | Canola | plastid | 40.88 | 50.39 |
| GSMUA_Achr11P... | Banana | plastid | 40.88 | 50.39 |
| CDY51422 | Canola | plastid | 38.99 | 50.0 |
| Bra003499.1-P | Field mustard | plastid | 40.25 | 49.61 |
| CDY11420 | Canola | plastid | 40.25 | 49.23 |
| Bra007678.1-P | Field mustard | plastid | 40.25 | 49.23 |
| CDX80101 | Canola | plastid | 38.99 | 49.21 |
| CDY55379 | Canola | plastid | 38.99 | 49.21 |
| Bra021396.1-P | Field mustard | plastid | 38.36 | 49.19 |
| CDX95723 | Canola | plastid | 38.36 | 48.41 |
| CDY27491 | Canola | plastid | 37.74 | 48.0 |
| PGSC0003DMT400018798 | Potato | cytosol | 37.74 | 47.62 |
| AT2G47400.1 | Thale cress | plastid | 37.11 | 47.58 |
| Bra004459.1-P | Field mustard | plastid | 37.74 | 47.24 |
| Bra000451.1-P | Field mustard | plastid | 37.11 | 46.83 |
| CDX83329 | Canola | plastid | 37.11 | 46.83 |
| Solyc06g009630.1.1 | Tomato | plastid | 37.11 | 46.46 |
| KRH31794 | Soybean | plastid | 36.48 | 44.96 |
| PGSC0003DMT400023336 | Potato | plastid | 34.59 | 44.35 |
| AT3G62410.1 | Thale cress | plastid | 36.48 | 44.27 |
| KRH69219 | Soybean | plastid | 35.22 | 43.75 |
| Solyc01g079470.2.1 | Tomato | plastid | 32.7 | 41.94 |
| KRH68260 | Soybean | plastid | 34.59 | 41.67 |
| KRG96526 | Soybean | nucleus | 37.11 | 35.76 |
| VIT_01s0026g02480.t01 | Wine grape | extracellular | 37.11 | 29.95 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G053940.2 | EnsemblPlantsGene:HORVU4Hr1G053940 | InterPro:DUF_CP12 | PANTHER:PTHR33921 | PANTHER:PTHR33921:SF9 | PFAM:PF02672 |
| SEG:seg | SMART:SM01093 | UniParc:UPI000B4637A1 | UniProt:A0A287P343 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr4H:+:449124803..449128616
Molecular Weight (calculated)
17119.9 Da
IEP (calculated)
5.299
GRAVY (calculated)
-0.562
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: EPHKNGVPQT ARPPSKTFSS TFLRTKCEAM ATITTMAFMA TFPAPRSVAQ PSATLPSRPS VVSFAARAMR AHGRRLVAVA GSPSTPPELA QKVTESIKQA
101: EETCAGDPVG GECVAAWDEV EELSAAASHA RDRKKEHSDP LEEFCEDNPE TDECRTYDS
101: EETCAGDPVG GECVAAWDEV EELSAAASHA RDRKKEHSDP LEEFCEDNPE TDECRTYDS
001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN
101: GGSDPLEEYC NDNPETDECR TYDN
Arabidopsis Description
CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.