Factsheet for GSMUA_Achr11P11670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P23890_001
GSMUA_Achr2P09720_001
GSMUA_Achr3P17420_001
GSMUA_Achr6P16250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	GSMUA_Achr3P17420_001	AT1G34430.1	21798944
AT3G62410.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT3G62410.1	GSMUA_Achr1P23890_001	AT1G32060.1	17947231
AT3G62410.1	GSMUA_Achr2P09720_001	AT1G32060.1	17947231
AT3G62410.1	GSMUA_Achr10P...	AT3G26650.1	17947231
AT3G62410.1	GSMUA_Achr6P16250_001	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13010_001	Banana	plastid	62.79	62.79
GSMUA_Achr11P...	Banana	plastid	55.81	55.81
GSMUA_Achr8P10530_001	Banana	plastid	50.39	50.78
AT2G47400.1	Thale cress	plastid	48.06	50.0
Bra003499.1-P	Field mustard	plastid	49.61	49.61
CDX67892	Canola	plastid	49.61	49.61
CDX95723	Canola	plastid	47.29	48.41
CDY51422	Canola	plastid	46.51	48.39
CDY25110	Canola	plastid	48.06	48.06
Bra021396.1-P	Field mustard	plastid	45.74	47.58
CDY55379	Canola	plastid	45.74	46.83
PGSC0003DMT400018798	Potato	cytosol	45.74	46.83
KRH69219	Soybean	plastid	45.74	46.09
CDX80101	Canola	plastid	44.96	46.03
CDX83329	Canola	plastid	44.96	46.03
Bra000451.1-P	Field mustard	plastid	44.96	46.03
PGSC0003DMT400023336	Potato	plastid	44.19	45.97
CDX76635	Canola	plastid	45.74	45.74
CDY27491	Canola	plastid	44.19	45.6
CDY11420	Canola	plastid	45.74	45.38
Bra007678.1-P	Field mustard	plastid	45.74	45.38
AT3G62410.1	Thale cress	plastid	45.74	45.04
Solyc06g009630.1.1	Tomato	plastid	44.19	44.88
Solyc01g079470.2.1	Tomato	plastid	41.86	43.55
KRH68260	Soybean	plastid	44.19	43.18
Bra004459.1-P	Field mustard	plastid	41.86	42.52
KRH31794	Soybean	plastid	39.53	39.53
KRG96526	Soybean	nucleus	50.39	39.39
VIT_01s0026g02480.t01	Wine grape	extracellular	53.49	35.03

Protein Annotations

EnsemblPlants:GSMUA_Achr11P11670_001	EnsemblPlants:GSMUA_Achr11T11670_001	EnsemblPlantsGene:GSMUA_Achr11G11670_001	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF10
PFAM:PF02672	SEG:seg	SMART:SM01093	UniParc:UPI000296F037	UniProt:M0RRE7	MapMan:35.2

Description

Calvin cycle protein CP12 [Source:GMGC_GENE;Acc:GSMUA_Achr11G11670_001]

Coordinates

chr11:+:10373509..10373898

Molecular Weight (calculated)

13790.1 Da

IEP (calculated)

4.666

GRAVY (calculated)

-0.423

Length

129 amino acids

Sequence
(BLAST)

001: MATVLAGISI SIPRVLVSTK AELPKPPLSR TRLPPWTSGH RVNSRRAGLV ASAPSMPPNI SEKVAESIKN AEATCAEDAA SGECAAAWDE VEELSAAASH
101: ARDKLKVDDP LESFCKDSPD NEECRTYED

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.