Factsheet for PGSC0003DMT400030050

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018798
PGSC0003DMT400023336
PGSC0003DMT400024090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	PGSC0003DMT400024090	AT1G32060.1	17947231
AT3G26650.1	PGSC0003DMT400018798	AT3G62410.1	17947231
AT3G26650.1	PGSC0003DMT400023336	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009030.2.1	Tomato	plastid	98.5	98.5
CDY26599	Canola	plastid	87.22	87.22
CDY19412	Canola	plastid	87.22	87.22
CDX98028	Canola	plastid	87.22	87.22
Bra019797.1-P	Field mustard	plastid	86.97	86.97
CDY16038	Canola	plastid	86.97	86.97
Bra026948.1-P	Field mustard	plastid	86.72	86.72
AT3G26650.1	Thale cress	plastid	85.46	86.11
Bra025219.1-P	Field mustard	plastid	81.7	85.79
CDY28536	Canola	plastid	81.45	85.53
CDY13649	Canola	plastid	81.2	85.26
CDX83635	Canola	plastid	80.95	85.0
VIT_14s0068g00680.t01	Wine grape	plastid	85.71	84.65
Bra032939.1-P	Field mustard	plastid	70.68	84.43
CDY48981	Canola	plastid	77.44	83.97
Zm00001d003429_P001	Maize	plastid	84.46	83.62
Os04t0459500-02	Rice	plastid	83.96	83.33
TraesCS2D01G322900.1	Wheat	plastid	82.96	82.54
TraesCS2B01G342200.1	Wheat	plastid	82.96	82.54
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.71	82.29
GSMUA_Achr10P...	Banana	plastid	63.91	81.21
HORVU0Hr1G004830.6	Barley	plastid	82.71	80.88
KXG26468	Sorghum	plastid	83.21	79.43
Zm00001d025607_P001	Maize	cytosol, plastid	73.93	79.3
AT1G12900.5	Thale cress	endoplasmic reticulum	85.71	77.55
Zm00001d025599_P001	Maize	plastid	78.2	77.42
PGSC0003DMT400087142	Potato	plastid	42.86	76.68
Zm00001d025593_P001	Maize	plastid	77.44	76.67
GSMUA_Achr6P16250_001	Banana	plastid	83.46	76.03
KRH70104	Soybean	plastid	51.38	74.28
PGSC0003DMT400025881	Potato	plastid	75.94	67.33
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	75.44	66.89
PGSC0003DMT400039449	Potato	extracellular	39.1	46.29
PGSC0003DMT400069357	Potato	cytosol	38.85	45.99
PGSC0003DMT400044944	Potato	extracellular	38.85	45.86
PGSC0003DMT400010575	Potato	cytosol	38.35	45.4
PGSC0003DMT400029242	Potato	plastid	42.36	40.33
PGSC0003DMT400044945	Potato	cytosol	12.53	28.25

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	EntrezGene:102587206	Gene3D:3.30.360.10	Gene3D:3.40.50.720
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
UniProt:M1ATQ7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400011530	PGSC:PGSC0003DMG400011530
EnsemblPlants:PGSC0003DMT400030050	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000296C261	RefSeq:XP_006359279.1
SEG:seg	:	:	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400011530]

Coordinates

chr4:+:4585086..4587819

Molecular Weight (calculated)

42710.3 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.007

Length

399 amino acids

Sequence
(BLAST)

001: MAALSVANTS LKVSNKGFSE FSGLRTSSAV PFGRKTNDDL FSVAGLQTSA IGGRKNKRIV TEAKLKVAIN GFGRIGRNFL RCWHGRKDSP LDVIAINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPVGTDGI SVDGKIIQVV SNRDPVNLPW GELGIDLVIE GTGVFVDREG AGKHIQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYNHDEPI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPSLKGK LNGIALRVPT
301: PNVSVVDLVV QVTKKTFAEE VNAAFREAAD KELNGILAVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANQWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.