Factsheet for PGSC0003DMT400029242

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005510.2.1	Tomato	plastid	97.37	97.37
GSMUA_Achr5P00240_001	Banana	cytosol	45.82	91.87
CDY25342	Canola	plastid	79.47	80.24
Bra008416.1-P	Field mustard	plastid	78.76	79.52
CDY22281	Canola	plastid	79.47	79.47
KRH66238	Soybean	plastid	79.24	79.43
VIT_19s0085g00600.t01	Wine grape	plastid	81.15	79.25
AT1G79530.1	Thale cress	plastid	79.71	79.15
AT1G16300.1	Thale cress	plastid	79.24	79.05
CDY33343	Canola	plastid	79.95	78.64
CDX67990	Canola	plastid	79.0	78.62
CDX79324	Canola	plastid	79.0	78.62
Bra026068.1-P	Field mustard	plastid	79.47	78.54
KRH07324	Soybean	extracellular, nucleus	78.28	78.47
EES04595	Sorghum	plastid	77.33	78.45
CDY35080	Canola	plastid	79.71	78.4
Os02t0171100-01	Rice	extracellular, plastid	76.13	77.62
TraesCS6D01G146900.1	Wheat	plastid	76.85	77.4
Bra003606.1-P	Field mustard	plastid	78.76	77.28
TraesCS7B01G380500.1	Wheat	plastid	75.18	77.02
TraesCS6A01G157500.1	Wheat	plastid	76.37	76.92
TraesCS6B01G185400.1	Wheat	plastid	76.13	76.68
TraesCS7A01G478100.2	Wheat	plastid	74.94	76.59
HORVU6Hr1G032070.2	Barley	plastid	75.42	75.96
Os06t0666600-01	Rice	extracellular, plastid	73.99	74.7
PGSC0003DMT400044944	Potato	extracellular	59.67	73.96
PGSC0003DMT400069357	Potato	cytosol	58.47	72.7
TraesCS7D01G465500.1	Wheat	plastid	74.94	72.69
PGSC0003DMT400039449	Potato	extracellular	58.23	72.4
PGSC0003DMT400010575	Potato	cytosol	58.23	72.4
HORVU7Hr1G108580.4	Barley	plastid	66.11	67.56
PGSC0003DMT400044945	Potato	cytosol	25.06	59.32
GSMUA_Achr5P00230_001	Banana	plastid	29.59	56.36
PGSC0003DMT400030050	Potato	cytosol	40.33	42.36
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	42.96	40.0
PGSC0003DMT400025881	Potato	plastid	42.48	39.56
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	11.93	37.59
PGSC0003DMT400087142	Potato	plastid	18.38	34.53
Zm00001d015885_P001	Maize	mitochondrion	12.41	34.21
Zm00001d021798_P001	Maize	cytosol	19.09	30.77
Zm00001d016297_P001	Maize	cytosol	9.79	29.93

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:102589564	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
UniProt:M1ASG7	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400011246	PGSC:PGSC0003DMG400011246
EnsemblPlants:PGSC0003DMT400029242	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000296A818	RefSeq:XP_006352588.1	SEG:seg

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400011246]

Coordinates

chr10:-:591227..596705

Molecular Weight (calculated)

44433.0 Da

IEP (calculated)

8.654

GRAVY (calculated)

-0.070

Length

419 amino acids

Sequence
(BLAST)

001: MAFSSLLKPT ASLVRPSHRS QASCAGLHHS SNSVKLQSSV FGDAVTILQS SSLQKSGACS IQPIRATATE LPPTVPRSQT GGKTRIGING FGRIGRLVLR
101: IATFRDDIDV VAVNDPFIDA KYMAYMLKYD STHGVYSGSI SVLDDSTLEI NGKQIKVSSK RDPADILWGD LGADYVVESS GVFTTIDKAS AHKKGGAKKV
201: VISAPSADAP MFVVGVNEKT YKANMDVVSN ASCTTNCLAP LAKVVHEEFG IVEGLMTTVH ATTATQKTVD GPSMKDWRGG RGAGQNIIPS STGAAKAVGK
301: VLPELNGKLT GMAFRVPTPN VSVVDLTCRL DKSASYDDVK AALKYASEGP LKGILGYTDE DVVSNDFVGD SRSSIFDAKA GIGLSKSFVK LVSWYDNEWG
401: YSNRVLDLIE HMALVAATN

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.