Factsheet for Os02t0171100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 7
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
extracellular: 25047395
extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04595	Sorghum	plastid	93.43	92.98
GSMUA_Achr5P00240_001	Banana	cytosol	46.47	91.39
Zm00001d015383_P001	Maize	plastid	92.7	90.93
TraesCS6D01G146900.1	Wheat	plastid	91.48	90.38
TraesCS6A01G157500.1	Wheat	plastid	90.75	89.66
TraesCS6B01G185400.1	Wheat	plastid	90.02	88.94
HORVU6Hr1G032070.2	Barley	plastid	89.54	88.46
Zm00001d053798_P004	Maize	plastid	85.4	84.58
Os06t0666600-01	Rice	extracellular, plastid	84.67	83.86
Bra008416.1-P	Field mustard	plastid	78.1	77.35
CDY25342	Canola	plastid	78.1	77.35
Solyc10g005510.2.1	Tomato	plastid	78.83	77.33
CDX67990	Canola	plastid	79.08	77.2
CDX79324	Canola	plastid	79.08	77.2
CDY22281	Canola	plastid	78.35	76.85
AT1G79530.1	Thale cress	plastid	78.59	76.54
KRH66238	Soybean	plastid	77.62	76.32
PGSC0003DMT400029242	Potato	plastid	77.62	76.13
Bra003606.1-P	Field mustard	plastid	79.08	76.11
KRH07324	Soybean	extracellular, nucleus	77.37	76.08
AT1G16300.1	Thale cress	plastid	77.62	75.95
Bra026068.1-P	Field mustard	plastid	77.62	75.24
VIT_19s0085g00600.t01	Wine grape	plastid	78.35	75.06
CDY33343	Canola	plastid	77.62	74.88
CDY35080	Canola	plastid	77.37	74.65
Os04t0486600-01	Rice	plastid	60.34	73.59
Os02t0601300-01	Rice	plasma membrane	60.1	73.29
Os08t0126300-01	Rice	cytosol	59.61	72.7
GSMUA_Achr5P00230_001	Banana	plastid	30.17	56.36
Os04t0459500-02	Rice	plastid	40.39	41.29
Os03t0129300-01	Rice	extracellular, plastid	43.8	40.54
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	12.9	39.85

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EntrezGene:4328446
EMBL:AK070032	ProteinID:BAD25194.1	ProteinID:BAD25496.1	ProteinID:BAF07945.1	ProteinID:BAS77202.1	ProteinID:EEE56402.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os02g0171100	EnsemblPlants:Os02t0171100-01	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	UniProt:Q6H703	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI00003B43AB	RefSeq:XP_015627707.1	SEG:seg	:

Description

Similar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) (GAPDH). (Os02t0171100-01);Similar to glyceraldehyde-3-phosphate dehydrogenase, cytosolic. (Os02t0171100-02)

Coordinates

chr2:+:3868115..3872945

Molecular Weight (calculated)

43319.6 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.059

Length

411 amino acids

Sequence
(BLAST)

001: MAQQLSAPFR AAAAAGSRAS AAAADPAKVL RLRSAGSAQF TSIAASSSFA RNIEPLRAIA TQAPPAVPQY SSGEKTKVGI NGFGRIGRLV LRIATSRDDI
101: EVVAVNDPFI DAKYMAYMFK YDSTHGPFKG SIKVVDDSTL EINGKKVTIT SKRDPADIPW GNFGAEYVVE SSGVFTTTEK ASAHLKGGAK KVVISAPSAD
201: APMFVVGVNE KSYDPKMNVV SNASCTTNCL APLAKVVHEE FGIVEGLMTT VHATTATQKT VDGPSMKDWR GGRGAAQNII PSSTGAAKAV GKVLPELNGK
301: LTGMAFRVPT PNVSVVDLTC RIEKSASYDD VKAAIKAASE GALKGILGYT DEDVVSNDFV GDARSSIFDA KAGIGLSSSF MKLVSWYDNE WGYSNRVLDL
401: IAHMALVNAK H

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.