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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular

Predictor Summary:
  • plastid 9
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:cytosol, mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G380500.1 Wheat plastid 89.16 90.46
GSMUA_Achr5P00240_001 Banana cytosol 45.54 90.43
TraesCS7A01G478100.2 Wheat plastid 88.67 89.76
TraesCS7D01G465500.1 Wheat plastid 88.67 85.19
Os02t0171100-01 Rice extracellular, plastid 83.86 84.67
HORVU7Hr1G108580.4 Barley plastid 77.83 78.78
Bra008416.1-P Field mustard plastid 77.11 77.11
CDY25342 Canola plastid 77.11 77.11
CDY22281 Canola plastid 77.35 76.61
CDX79324 Canola plastid 77.59 76.48
AT1G79530.1 Thale cress plastid 77.59 76.3
CDX67990 Canola plastid 77.11 76.01
AT1G16300.1 Thale cress plastid 76.87 75.95
VIT_19s0085g00600.t01 Wine grape plastid 78.07 75.52
KRH07324 Soybean extracellular, nucleus 75.9 75.36
Solyc10g005510.2.1 Tomato plastid 75.9 75.18
Bra003606.1-P Field mustard plastid 77.35 75.18
Bra026068.1-P Field mustard plastid 76.39 74.76
KRH66238 Soybean plastid 75.18 74.64
CDY33343 Canola plastid 76.39 74.41
CDY35080 Canola plastid 76.14 74.18
PGSC0003DMT400029242 Potato plastid 74.7 73.99
Os02t0601300-01 Rice plasma membrane 59.52 73.29
Os04t0486600-01 Rice plastid 59.52 73.29
Os08t0126300-01 Rice cytosol 57.83 71.22
GSMUA_Achr5P00230_001 Banana plastid 30.12 56.82
Os04t0459500-02 Rice plastid 40.24 41.54
Os03t0129300-01 Rice extracellular, plastid 42.89 40.09
GSMUA_Achr2P02630_001 Banana endoplasmic reticulum, extracellular 12.77 39.85
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:3.12.4Gene3D:3.30.360.10Gene3D:3.40.50.720EntrezGene:4341782
EMBL:AK106824ProteinID:BAD45405.1ProteinID:BAF20223.1ProteinID:BAS99039.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0006006GO:GO:0008150GO:GO:0008152
GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287GO:GO:0055114InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os06g0666600
EnsemblPlants:Os06t0666600-01PFAM:PF00044PFAM:PF02800PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR10836
PANTHER:PTHR10836:SF46UniProt:Q655W2SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534
UniParc:UPI000043A2A4RefSeq:XP_015641029.1SEG:seg:::
Description
Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12). (Os06t0666600-01)
Coordinates
chr6:-:27601270..27605299
Molecular Weight (calculated)
43496.7 Da
IEP (calculated)
8.879
GRAVY (calculated)
-0.073
Length
415 amino acids
Sequence
(BLAST)
001: MASLAVPLRA SATPAIAGTG SGGGSRAADP VKVSCVRSKV TCGFPSVGAS SSLASSVEPV RATATQAPLA THQSSSTEKT KVGINGFGRI GRLVLRIATN
101: RDDIEVVAVN DPFIDAKYMA YMFKYDSTHG PFKGTIKVVD ESTLEINGKK ISVTSKRDPS DIPWGNFGAE YVVESSGVFT TTEKASAHLK GGARKVVISA
201: PSADAPMFVV GVNEKNYNPS MNVVSNASCT TNCLAPLAKI VHEEFGIAEG LMTTVHATTA TQKTVDGPSM KDWRGGRGAS QNIIPSSTGA AKAVGKVLPA
301: LNGKLTGMAF RVPTPNVSVV DLTCRLEKSA SYEDVKAAIK EASEGSLKGI LGYTDEDVVS NDFIGDTRSS IFDAKAGIGL SSSFMKLVSW YDNEWGYSNR
401: VLDLIGHMAL VNAKP
Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)
001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR
Arabidopsis Description
GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.