Factsheet for Os03t0129300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os03t0129300-01
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	Os03t0129300-01	AT1G42970.1	21798944
AT1G42970.1	Os01t0218200-00	AT2G42580.1	19000166
AT1G42970.1	Os05t0210600-01	AT2G42580.1	19000166
AT1G42970.1	Os05t0587300-01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40264	Sorghum	plastid	93.24	93.24
Zm00001d027488_P001	Maize	extracellular, plastid	93.24	92.2
HORVU4Hr1G082700.4	Barley	plastid	90.99	90.99
TraesCS4D01G319400.1	Wheat	plastid	90.99	90.99
TraesCS5A01G495100.1	Wheat	golgi, plastid	90.77	90.77
TraesCS4B01G323000.1	Wheat	plastid	90.54	90.54
GSMUA_Achr11P...	Banana	mitochondrion	76.8	86.77
CDY69523	Canola	cytosol	77.03	85.07
VIT_18s0122g00960.t01	Wine grape	plastid	84.01	82.34
AT1G42970.1	Thale cress	plastid	82.66	82.1
Bra034927.1-P	Field mustard	plastid	82.43	81.7
CDY35800	Canola	plastid	82.43	81.7
KRH60895	Soybean	nucleus, plastid	82.88	81.6
GSMUA_Achr11P...	Banana	plastid	82.66	81.19
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	82.21	81.11
KRH51576	Soybean	nucleus, plastid	82.66	81.02
PGSC0003DMT400025881	Potato	plastid	81.98	80.89
Solyc12g094640.1.1	Tomato	plastid	81.98	80.89
Solyc04g082630.2.1	Tomato	plastid	82.21	76.68
Os04t0459500-02	Rice	plastid	65.99	72.89
KRH74912	Soybean	cytosol	22.3	70.71
Os02t0601300-01	Rice	plasma membrane	36.49	48.07
Os04t0486600-01	Rice	plastid	36.26	47.77
Os08t0126300-01	Rice	cytosol	36.26	47.77
Os02t0171100-01	Rice	extracellular, plastid	40.54	43.8
Os06t0666600-01	Rice	extracellular, plastid	40.09	42.89

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EntrezGene:4331495
ProteinID:AAN17393.1	ProteinID:ABF93788.1	ProteinID:BAA85402.1	ProteinID:BAF10761.1	ProteinID:BAS82114.1	InterPro:DUF_CP12
ProteinID:EAZ25455.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009416	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009744
GO:GO:0009941	GO:GO:0010319	GO:GO:0016020	GO:GO:0016491	GO:GO:0016620	GO:GO:0046686
GO:GO:0048046	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os03g0129300	EnsemblPlants:Os03t0129300-01
PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	UniProt:Q9SNK3	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534
UniParc:UPI00000A9F17	RefSeq:XP_015630808.1	SEG:seg	:	:	:

Description

glyceraldehyde-3-phosphate dehydrogenase, chloroplastic glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic GAPDH B subunitSimilar to Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) (Fragment). (Os03t0129300-01);Similar to cDNA clone:J013118G18, full insert sequence. (Os03t0129300-02)

Coordinates

chr3:+:1662306..1665491

Molecular Weight (calculated)

47113.2 Da

IEP (calculated)

6.671

GRAVY (calculated)

0.007

Length

444 amino acids

Sequence
(BLAST)

001: MATHAALAAS RIPATARLHS KAASKQRVDF ADFSGLRPGS CSISHAAREA SFSDVLGSQL VARATGENAV RAPAEAKLKV AINGFGRIGR NFLRCWHERE
101: NSPLEVVVVN DSGGVRNASH LLKYDSMLGT FKADVKIVDD QTISVDGKLI KVVSNRDPLK LPWAELGIDI VIEGTGVFVD GPGAGKHIQA GAKKVIITAP
201: AKGADIPTYV LGVNEGDYSH EVANIISNAS CTTNCLAPFV KILDEEFGIV KGTMTTTHSY TGDQRLLDAS HRDLRRARAA ALNIVPTSTG AAKAVALVLP
301: QLKGKLNGIA LRVPTPNVSV VDLVINTVKT GITADDVNAA FRKAAAGPLS GILDVCDVPL VSVDFRCSDV SSTIDASLTM VMGDDMVKVV AWYDNEWGYS
401: QRVVDLAHLV ASKWPGAAVQ GSGDPLEDFC KDNPETDECK VYEN

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.