CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037
KRH51576
KRH60895
KRH74912

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	KRH51576	AT1G42970.1	21798944
AT1G42970.1	KRH60895	AT1G42970.1	21798944
AT1G42970.1	KRH74912	AT1G42970.1	21798944
AT1G42970.1	KRH22291	AT2G42580.1	19000166
AT1G42970.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51576	Soybean	nucleus, plastid	98.0	97.57
GSMUA_Achr11P...	Banana	mitochondrion	78.49	90.08
VIT_18s0122g00960.t01	Wine grape	plastid	90.47	90.07
CDY69523	Canola	cytosol	79.82	89.55
PGSC0003DMT400025881	Potato	plastid	89.14	89.33
Solyc12g094640.1.1	Tomato	plastid	87.14	87.33
Bra034927.1-P	Field mustard	plastid	86.7	87.28
CDY35800	Canola	plastid	86.7	87.28
AT1G42970.1	Thale cress	plastid	86.47	87.25
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	86.92	87.11
GSMUA_Achr11P...	Banana	plastid	86.7	86.5
Solyc04g082630.2.1	Tomato	plastid	89.36	84.66
Os03t0129300-01	Rice	extracellular, plastid	81.6	82.88
KXG40264	Sorghum	plastid	80.93	82.21
TraesCS4D01G319400.1	Wheat	plastid	80.04	81.31
Zm00001d027488_P001	Maize	extracellular, plastid	80.93	81.29
HORVU4Hr1G082700.4	Barley	plastid	79.82	81.08
TraesCS5A01G495100.1	Wheat	golgi, plastid	79.82	81.08
TraesCS4B01G323000.1	Wheat	plastid	79.82	81.08
KRH74912	Soybean	cytosol	23.73	76.43
KRG94751	Soybean	extracellular, nucleus	65.41	73.2
KRH06774	Soybean	nucleus	65.19	72.95
KRH08444	Soybean	cytosol	39.02	67.43
KRH70104	Soybean	plastid	39.02	63.77
KRH26225	Soybean	mitochondrion	38.36	54.57
KRH31426	Soybean	endoplasmic reticulum	37.25	49.41
KRG97466	Soybean	endoplasmic reticulum, nucleus	37.25	49.41
KRH63725	Soybean	endoplasmic reticulum, nucleus	37.03	49.41
KRH63724	Soybean	nucleus	37.03	49.41
KRH54234	Soybean	endoplasmic reticulum, nucleus	37.03	49.41
KRH54227	Soybean	endoplasmic reticulum, nucleus	36.81	49.11
KRH57621	Soybean	endoplasmic reticulum	35.92	48.07
KRG94350	Soybean	cytosol, mitochondrion	35.7	47.77
KRH66238	Soybean	plastid	41.69	44.98
KRH07324	Soybean	extracellular, nucleus	41.24	44.5
KRH37937	Soybean	plastid	6.43	32.95

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	EntrezGene:100806482	Gene3D:3.30.360.10	Gene3D:3.40.50.720
EMBL:ACUP02002142	EMBL:BT094242	UniProt:C6T9R8	InterPro:DUF_CP12	EnsemblPlantsGene:GLYMA_04G015900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	ProteinID:KRH60894.1
EnsemblPlants:KRH60895	ProteinID:KRH60895	ProteinID:KRH60895.1	ProteinID:KRH60896.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF1
MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001B15D0A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:1205398..1209004

Molecular Weight (calculated)

48176.6 Da

IEP (calculated)

7.475

GRAVY (calculated)

-0.059

Length

451 amino acids

Sequence
(BLAST)

001: MATHAALAST RIPSNTRFPS KASHSFPTQC ALKRLEVTEF SGLRSTSCVT YANSARESSF FDLVASQLTP KTNGSTPVRG ETVAKLKVAI NGFGRIGRNF
101: LRCWHGRKDS PLEVVVVNDS GGVKNASHLL KYDSMLGTFK ADVKILDNET ITVDGKSIKV VSSRDPLKLP WAELGIDIVI EGTGVFVDGP GAGKHIQAGA
201: KKVIITAPAK GADIPTYVVG VNEGDYTHEI SNIISNASCT TNCLAPFVKI LDAEFGIVKG TMTTTHSYTG DQRLLDASHR DLRRARAAAL NIVPTSTGAA
301: KAVSLVLPQL KGKLNGIALR VPTPNVSVVD LVVNVEKKGL TAEDVNAAFR KAAEGPLKGV LDVCDVPLVS IDFRCSDVSS TIDSSLTMVM GDDMVKVVAW
401: YDNEWGYSQR VVDLAHLVAS KWPGAPKAGS GDPLEDFCET NPADEECKVY E

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.