CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94350	Soybean	cytosol, mitochondrion	97.63	97.63
KRH31426	Soybean	endoplasmic reticulum	86.65	85.88
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.65	85.88
VIT_14s0171g00440.t01	Wine grape	cytosol	84.87	84.87
PGSC0003DMT400010575	Potato	cytosol	84.87	84.87
Solyc05g005820.2.1	Tomato	plastid, unclear	84.57	84.57
HORVU2Hr1G123170.1	Barley	cytosol	9.5	84.21
HORVU2Hr1G123240.1	Barley	cytosol	9.5	84.21
KRH63724	Soybean	nucleus	83.98	83.73
KRH54234	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
KRH63725	Soybean	endoplasmic reticulum, nucleus	83.68	83.43
KRH54227	Soybean	endoplasmic reticulum, nucleus	83.38	83.14
HORVU6Hr1G089870.1	Barley	cytosol	9.79	78.57
Solyc05g014480.2.1	Tomato	cytosol	8.31	73.68
Solyc01g098950.1.1	Tomato	cytosol	58.75	71.22
GSMUA_Achr11P...	Banana	mitochondrion	77.45	62.44
KRH66238	Soybean	plastid	71.81	57.89
KRH07324	Soybean	extracellular, nucleus	71.81	57.89
KRH37937	Soybean	plastid	13.06	50.0
Solyc03g111000.2.1	Tomato	cytosol	24.63	47.7
KRH08444	Soybean	cytosol	30.56	39.46
KXG19697	Sorghum	cytosol	11.28	39.18
KRG94751	Soybean	extracellular, nucleus	46.29	38.71
KRH06774	Soybean	nucleus	45.99	38.46
KRH74912	Soybean	cytosol	15.43	37.14
KRH51576	Soybean	nucleus, plastid	48.37	35.98
KRH60895	Soybean	nucleus, plastid	48.07	35.92
KXG28726	Sorghum	cytosol	16.02	35.53
KRH70104	Soybean	plastid	26.41	32.25
KRH26225	Soybean	mitochondrion	26.71	28.39

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:100794095	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720
EMBL:ACUP02002868	EnsemblPlantsGene:GLYMA_05G073100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I1K135	EnsemblPlants:KRH57621	ProteinID:KRH57621	ProteinID:KRH57621.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF60	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0002339B14	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:8115356..8119371

Molecular Weight (calculated)

36407.7 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.082

Length

337 amino acids

Sequence
(BLAST)

001: MGQKIKIGIN GFGRIGRLVA RVALQRDDVE LVAVNDPFIT TDYMTYMFKY DTVHGKFKNC EIKIKDSKTL LLGSSPVTVF GIRNPEEIPW GEAGADYVVE
101: STGVFTDKDK AAAHLKGGAK KVIISAPSKD APMFVVGVNE KEYKSDITVV SNASCTTNCL APLAKVIHDK FGILEGLMST VHSMTATQKT VDGPSMKDWR
201: GGRAASCNII PSSTGAAKAV GKVLPSLNNK LTGMSFRVPT VDVSVVDLTV RLEKGASYDE IKAAVKEASE GSMKGILGYT EDDVVSTDFV GDNRSSIFDA
301: KAGISLNNNF VKLVSWYDNE WGYSTRVVDL IRHMASV

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.