CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57621	Soybean	endoplasmic reticulum	97.63	97.63
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.65	85.88
KRH31426	Soybean	endoplasmic reticulum	86.35	85.59
VIT_14s0171g00440.t01	Wine grape	cytosol	85.16	85.16
PGSC0003DMT400010575	Potato	cytosol	84.87	84.87
Solyc05g005820.2.1	Tomato	plastid, unclear	84.57	84.57
KRH54234	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
KRH63724	Soybean	nucleus	83.68	83.43
KRH63725	Soybean	endoplasmic reticulum, nucleus	83.38	83.14
KRH54227	Soybean	endoplasmic reticulum, nucleus	83.09	82.84
HORVU2Hr1G123170.1	Barley	cytosol	9.2	81.58
HORVU2Hr1G123240.1	Barley	cytosol	9.2	81.58
HORVU6Hr1G089870.1	Barley	cytosol	9.5	76.19
Solyc05g014480.2.1	Tomato	cytosol	8.31	73.68
Solyc01g098950.1.1	Tomato	cytosol	59.35	71.94
GSMUA_Achr11P...	Banana	mitochondrion	78.04	62.92
KRH66238	Soybean	plastid	71.51	57.66
KRH07324	Soybean	extracellular, nucleus	71.51	57.66
KRH37937	Soybean	plastid	13.35	51.14
Solyc03g111000.2.1	Tomato	cytosol	24.63	47.7
KXG19697	Sorghum	cytosol	11.28	39.18
KRH08444	Soybean	cytosol	30.27	39.08
KRG94751	Soybean	extracellular, nucleus	45.99	38.46
KRH06774	Soybean	nucleus	45.7	38.21
KRH74912	Soybean	cytosol	14.84	35.71
KRH60895	Soybean	nucleus, plastid	47.77	35.7
KXG28726	Sorghum	cytosol	16.02	35.53
KRH51576	Soybean	nucleus, plastid	47.48	35.32
KRH70104	Soybean	plastid	26.11	31.88
KRH26225	Soybean	mitochondrion	26.41	28.08

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:100810217	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720
EMBL:ACUP02011936	EnsemblPlantsGene:GLYMA_19G078300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I1N7G7	EnsemblPlants:KRG94350	ProteinID:KRG94350	ProteinID:KRG94350.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF60	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000233F2E8	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:28066310..28070680

Molecular Weight (calculated)

36407.6 Da

IEP (calculated)

7.032

GRAVY (calculated)

-0.083

Length

337 amino acids

Sequence
(BLAST)

001: MGQKIKIGIN GFGRIGRLVA RVAMQNDDVE LVAVNDPFIT TDYMTYMFKY DTVHGQFKNC EIKVKDSKTL LFGSSSVTVF GIRNPEEIPW GEAGADYVVE
101: STGVFTDQDK AAAHLKGGAK KVIISAPSKD APMFVVGVNE KEYKSDITVV SNASCTTNCL APLAKVIHDK FGILEGLMST VHSMTATQKT VDGPSMKDWR
201: GGRAASCNII PSSTGAAKAV GKVLPSLNNK LTGMSFRVPT VDVSVVDLTV RLEKGASYDE IKAAIKEASE GSMKGILGYT EDDVVSTDFV GDNRSSIFDA
301: KAGISLNNNF VKLVSWYDNE WGYSTRVVDL IRHMASV

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.