Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G42970.1 | KRH51576 | AT1G42970.1 | 21798944 |
| AT1G42970.1 | KRH60895 | AT1G42970.1 | 21798944 |
| AT1G42970.1 | KRH74912 | AT1G42970.1 | 21798944 |
| AT1G42970.1 | KRH22291 | AT2G42580.1 | 19000166 |
| AT1G42970.1 | KRH27037 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | mitochondrion | 74.29 | 26.46 |
| CDY69523 | Canola | cytosol | 70.0 | 24.38 |
| KRH60895 | Soybean | nucleus, plastid | 76.43 | 23.73 |
| KRH51576 | Soybean | nucleus, plastid | 76.43 | 23.62 |
| KRH08444 | Soybean | cytosol | 43.57 | 23.37 |
| VIT_18s0122g00960.t01 | Wine grape | plastid | 74.29 | 22.96 |
| PGSC0003DMT400025881 | Potato | plastid | 72.86 | 22.67 |
| Solyc12g094640.1.1 | Tomato | plastid | 72.86 | 22.67 |
| GSMUA_Achr11P... | Banana | plastid | 72.86 | 22.57 |
| TraesCS4D01G319400.1 | Wheat | plastid | 71.43 | 22.52 |
| PGSC0003DMT400075608 | Potato | cytosol, extracellular, plastid | 72.14 | 22.44 |
| TraesCS4B01G323000.1 | Wheat | plastid | 70.71 | 22.3 |
| TraesCS5A01G495100.1 | Wheat | golgi, plastid | 70.71 | 22.3 |
| HORVU4Hr1G082700.4 | Barley | plastid | 70.71 | 22.3 |
| Os03t0129300-01 | Rice | extracellular, plastid | 70.71 | 22.3 |
| CDY35800 | Canola | plastid | 70.71 | 22.1 |
| Bra034927.1-P | Field mustard | plastid | 70.71 | 22.1 |
| KXG40264 | Sorghum | plastid | 70.0 | 22.07 |
| Zm00001d027488_P001 | Maize | extracellular, plastid | 70.0 | 21.83 |
| AT1G42970.1 | Thale cress | plastid | 69.29 | 21.7 |
| Solyc04g082630.2.1 | Tomato | plastid | 72.86 | 21.43 |
| KRG94751 | Soybean | extracellular, nucleus | 57.14 | 19.85 |
| KRH06774 | Soybean | nucleus | 57.14 | 19.85 |
| KRH31426 | Soybean | endoplasmic reticulum | 39.29 | 16.18 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 39.29 | 16.18 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 38.57 | 15.98 |
| KRH63724 | Soybean | nucleus | 38.57 | 15.98 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 37.86 | 15.68 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 37.86 | 15.68 |
| KRH57621 | Soybean | endoplasmic reticulum | 37.14 | 15.43 |
| KRG94350 | Soybean | cytosol, mitochondrion | 35.71 | 14.84 |
| KRH70104 | Soybean | plastid | 28.57 | 14.49 |
| KRH26225 | Soybean | mitochondrion | 32.14 | 14.2 |
| KRH07324 | Soybean | extracellular, nucleus | 40.71 | 13.64 |
| KRH66238 | Soybean | plastid | 40.71 | 13.64 |
| KRH37937 | Soybean | plastid | 2.14 | 3.41 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | EMBL:ACUP02000091 | EnsemblPlantsGene:GLYMA_01G051800 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016620 |
| GO:GO:0055114 | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | UniProt:K7K1X1 | EnsemblPlants:KRH74912 | ProteinID:KRH74912 | ProteinID:KRH74912.1 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 | PANTHER:PTHR43148 | PANTHER:PTHR43148:SF1 | SMART:SM00846 | SUPFAM:SSF51735 |
| TMHMM:TMhelix | UniParc:UPI000296CE4D | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:6280631..6282369
Molecular Weight (calculated)
14938.5 Da
IEP (calculated)
4.498
GRAVY (calculated)
0.412
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGTFKTDVK ILDNETITVD GKPIKVVSSR DPLKLPWAEL GIDIVIEGTR VFVDGPGAGK NIQAGAKKVI ITAPAKGADI PIYIVGINEG DYTHETSNIE
101: TLCMLCEAGF LTLAMCYTAG IQLSLMLVLG FMLPVTPEIS
101: TLCMLCEAGF LTLAMCYTAG IQLSLMLVLG FMLPVTPEIS
001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
Arabidopsis Description
GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.