Factsheet for VIT_18s0122g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01
VIT_18s0122g00960.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	VIT_18s0122g00960.t01	AT1G42970.1	21798944
AT1G42970.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT1G42970.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	78.81	90.84
Solyc12g094640.1.1	Tomato	plastid	90.07	90.67
PGSC0003DMT400025881	Potato	plastid	90.07	90.67
KRH60895	Soybean	nucleus, plastid	90.07	90.47
KRH51576	Soybean	nucleus, plastid	90.29	90.29
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	89.62	90.22
CDY69523	Canola	cytosol	79.69	89.8
GSMUA_Achr11P...	Banana	plastid	86.98	87.17
Bra034927.1-P	Field mustard	plastid	86.09	87.05
CDY35800	Canola	plastid	86.09	87.05
AT1G42970.1	Thale cress	plastid	85.43	86.58
Solyc04g082630.2.1	Tomato	plastid	90.29	85.92
KXG40264	Sorghum	plastid	83.0	84.68
Os03t0129300-01	Rice	extracellular, plastid	82.34	84.01
Zm00001d027488_P001	Maize	extracellular, plastid	83.0	83.74
TraesCS5A01G495100.1	Wheat	golgi, plastid	81.68	83.33
TraesCS4D01G319400.1	Wheat	plastid	81.46	83.11
TraesCS4B01G323000.1	Wheat	plastid	81.24	82.88
HORVU4Hr1G082700.4	Barley	plastid	81.02	82.66
KRH74912	Soybean	cytosol	22.96	74.29
VIT_14s0068g00680.t01	Wine grape	plastid	66.23	74.26
VIT_17s0000g10430.t01	Wine grape	extracellular	36.42	48.96
VIT_01s0010g02460.t01	Wine grape	cytosol	35.76	47.65
VIT_14s0171g00440.t01	Wine grape	cytosol	35.32	47.48
VIT_19s0085g00600.t01	Wine grape	plastid	41.5	43.82
VIT_14s0006g03030.t01	Wine grape	extracellular	8.39	42.22
VIT_18s0089g00560.t01	Wine grape	mitochondrion, peroxisome, plastid	10.38	24.48
VIT_18s0089g00590.t01	Wine grape	plastid	16.34	18.83

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	EntrezGene:100259814	wikigene:100259814	Gene3D:3.30.360.10
Gene3D:3.40.50.720	EMBL:AM438862	ProteinID:CAN69459	ProteinID:CAN69459.1	ProteinID:CBI40744	ProteinID:CBI40744.3
UniProt:D7UDC9	InterPro:DUF_CP12	EMBL:FN596759	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	EntrezGene:LOC100259814	wikigene:LOC100259814	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGR:TC59210	TIGR:TC60916
TIGR:TC66567	TIGRFAMs:TIGR01534	UniParc:UPI00015CC459	ArrayExpress:VIT_18s0122g00960	EnsemblPlantsGene:VIT_18s0122g00960	EnsemblPlants:VIT_18s0122g00960.t01
unigene:Vvi.7054	RefSeq:XP_002273754	RefSeq:XP_002273754.1	RefSeq:XP_002273783	RefSeq:XP_002273783.1	SEG:seg

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7UDC9]

Coordinates

chr18:+:681266..684519

Molecular Weight (calculated)

48122.6 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.022

Length

453 amino acids

Sequence
(BLAST)

001: MASHAALASS RIPTTNTRHP SKASHSFPTQ FFAKRLEVAE FSGLRSGGCV TFAKNAREPS FFDVVASQLT PKAGGPAPVR GETVAKLKVA INGFGRIGRN
101: FLRCWHGRKD SPLDVIVVND SGGVKNASHL LKYDSMLGTF KAEVKIVDNE TISVDGKPIK VVSSRDPLKL PWAELGIDIV IEGTGVFVDG PGAGKHIQAG
201: AKKVIITAPA KGADIPTYVV GVNEGDYSHE VSNIVSNASC TTNCLAPFVK ILDEELGIVK GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA
301: AKAVSLVLPQ LKGKLNGIAL RVPTPNVSVV DLVVNVEKKG ITAEDVNAAF RKAADGPLKG ILAVCDVPLV SVDFKCSDVS STIDASLTMV MGDDMVKVVA
401: WYDNEWGYSQ RVVDLAHLVA AKWPGFAAEG SGDPLEDFCK TNPADEECKV YEA

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.