Factsheet for Solyc12g094640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g082630.2.1
Solyc12g094640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	Solyc04g082630.2.1	AT1G42970.1	21798944
AT1G42970.1	Solyc12g094640.1.1	AT1G42970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	99.33	99.33
VIT_18s0122g00960.t01	Wine grape	plastid	90.67	90.07
CDY69523	Canola	cytosol	80.0	89.55
GSMUA_Achr11P...	Banana	mitochondrion	77.33	88.55
Solyc04g082630.2.1	Tomato	plastid	93.11	88.03
Bra034927.1-P	Field mustard	plastid	86.89	87.28
CDY35800	Canola	plastid	86.89	87.28
KRH60895	Soybean	nucleus, plastid	87.33	87.14
AT1G42970.1	Thale cress	plastid	86.44	87.02
KRH51576	Soybean	nucleus, plastid	87.56	86.98
GSMUA_Achr11P...	Banana	plastid	85.78	85.4
KXG40264	Sorghum	plastid	81.78	82.88
TraesCS5A01G495100.1	Wheat	golgi, plastid	81.56	82.66
TraesCS4D01G319400.1	Wheat	plastid	81.33	82.43
TraesCS4B01G323000.1	Wheat	plastid	81.11	82.21
HORVU4Hr1G082700.4	Barley	plastid	80.89	81.98
Os03t0129300-01	Rice	extracellular, plastid	80.89	81.98
Zm00001d027488_P001	Maize	extracellular, plastid	81.11	81.29
Solyc04g009030.2.1	Tomato	plastid	66.44	74.94
KRH74912	Soybean	cytosol	22.67	72.86
Solyc02g020940.2.1	Tomato	plastid	64.44	70.9
Solyc05g014480.2.1	Tomato	cytosol	4.22	50.0
Solyc03g111010.2.1	Tomato	plastid	36.89	49.26
Solyc05g014470.2.1	Tomato	extracellular, plastid	36.67	48.82
Solyc06g071920.2.1	Tomato	nucleus	35.56	47.48
Solyc05g005820.2.1	Tomato	plastid, unclear	34.67	46.29
Solyc10g005510.2.1	Tomato	plastid	40.22	43.2
Solyc01g098950.1.1	Tomato	cytosol	26.22	42.45
Solyc03g111000.2.1	Tomato	cytosol	13.33	34.48

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	InterPro:DUF_CP12
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
UniProt:K4DH36	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
EnsemblPlantsGene:Solyc12g094640.1	EnsemblPlants:Solyc12g094640.1.1	TIGRFAMs:TIGR01534	UniParc:UPI000276989F	SEG:seg	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4DH36]

Coordinates

chr12:+:64811931..64814993

Molecular Weight (calculated)

48001.3 Da

IEP (calculated)

7.155

GRAVY (calculated)

-0.061

Length

450 amino acids

Sequence
(BLAST)

001: MASHAALAPS RIPTSTRLLS KNSYSFPTQC FSKKFEVAEF SGLRSSGCVT FCNKESSFFD VVSAQLTPKT TGSAGPVKGE TVAKLKVAIN GFGRIGRNFL
101: RCWHGRKDSP LDVVVVNDSG GVKNASHLLK YDSMLGTFKA DVKIVDNETI SVDGKNIKVV SSRDPLKLPW AELGIDIVIE GTGVFVDGPG AGKHIQAGAK
201: KVIITAPAKG ADIPTYVVGV NEQDYSHEVA NIVSNASCTT NCLAPFAKIL DEEFGIVKGT MTTTHSYTGD QRLLDASHRD LRRARAAALN IVPTSTGAAK
301: AVSLVLPQLK GKLNGIALRV PTPNVSVVDL VINVEKKGIS AEDVNAAFRK AADGPLNGIL AVCDEPLVSV DFRCSDVSTT IDSSLTMVMG DDMVKIVAWY
401: DNEWGYSQRV VDLAHLVADK WPGSAAEGSG DALEDYCKTN PADKECKVYE

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.