Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000267.1-P
Bra004709.1-P
Bra034927.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G42970.1 Bra034927.1-P AT1G42970.1 21798944
AT1G42970.1 Bra000267.1-P AT2G42580.1 19000166
AT1G42970.1 Bra004709.1-P AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35800 Canola plastid 100.0 100.0
CDY69523 Canola cytosol 89.29 99.5
AT1G42970.1 Thale cress plastid 94.42 94.63
GSMUA_Achr11P... Banana mitochondrion 77.9 88.8
Solyc12g094640.1.1 Tomato plastid 87.28 86.89
KRH60895 Soybean nucleus, plastid 87.28 86.7
PGSC0003DMT400075608 Potato cytosol, extracellular, plastid 86.83 86.44
KRH51576 Soybean nucleus, plastid 87.28 86.31
PGSC0003DMT400025881 Potato plastid 86.61 86.22
VIT_18s0122g00960.t01 Wine grape plastid 87.05 86.09
GSMUA_Achr11P... Banana plastid 84.6 83.85
KXG40264 Sorghum plastid 81.92 82.66
HORVU4Hr1G082700.4 Barley plastid 81.7 82.43
Os03t0129300-01 Rice extracellular, plastid 81.7 82.43
TraesCS4B01G323000.1 Wheat plastid 81.7 82.43
TraesCS4D01G319400.1 Wheat plastid 81.47 82.21
TraesCS5A01G495100.1 Wheat golgi, plastid 81.25 81.98
Zm00001d027488_P001 Maize extracellular, plastid 81.7 81.51
Solyc04g082630.2.1 Tomato plastid 86.61 81.51
Bra025219.1-P Field mustard plastid 62.05 73.16
Bra026948.1-P Field mustard plastid 64.96 72.93
Bra019797.1-P Field mustard plastid 64.96 72.93
KRH74912 Soybean cytosol 22.1 70.71
Bra032939.1-P Field mustard plastid 52.46 70.36
Bra026904.1-P Field mustard cytosol 36.61 48.52
Bra016729.1-P Field mustard cytosol 36.61 48.38
Bra040213.1-P Field mustard cytosol 36.16 47.93
Bra040146.1-P Field mustard cytosol 36.16 47.93
Bra019722.1-P Field mustard cytosol 30.13 45.92
Bra008416.1-P Field mustard plastid 42.19 45.54
Bra003606.1-P Field mustard plastid 42.86 44.96
Bra026068.1-P Field mustard plastid 41.07 43.4
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:1.2.3Gene3D:3.30.360.10Gene3D:3.40.50.720EnsemblPlantsGene:Bra034927
EnsemblPlants:Bra034927.1EnsemblPlants:Bra034927.1-PInterPro:DUF_CP12GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005975GO:GO:0006006GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009409
GO:GO:0009416GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579
GO:GO:0009628GO:GO:0009744GO:GO:0009941GO:GO:0010319GO:GO:0016020GO:GO:0016491
GO:GO:0016620GO:GO:0046686GO:GO:0048046GO:GO:0050661GO:GO:0051287GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1UniProt:M4F1I1
InterPro:NAD(P)-bd_dom_sfPFAM:PF00044PFAM:PF02672PFAM:PF02800PRINTS:PR00078ScanProsite:PS00071
PANTHER:PTHR43148PANTHER:PTHR43148:SF1SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534
UniParc:UPI000254725DSEG:seg::::
Description
AT1G42970 (E=7e-234) GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase
Coordinates
chrA08:+:5184266..5186761
Molecular Weight (calculated)
47554.9 Da
IEP (calculated)
7.211
GRAVY (calculated)
0.001
Length
448 amino acids
Sequence
(BLAST)
001: MATHSALAVS RIPVKPRLQS KSAIHSFPAQ CSSKRLEVAA FSGLRVSSNG GEASFFDAIA AQITPKAVGT SSPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKADVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVVGVNEQ DYSHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAA GPLKGVLEVC DTPLVSCDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVAAKWPG EVAAGSGDPL EDFCKTNPAD EECKVYEA
Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)
001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
Arabidopsis Description
GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.