Factsheet for Bra025219.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003499.1-P
Bra007678.1-P
Bra023235.1-P
Bra033861.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Bra023235.1-P	AT1G32060.1	17947231
AT3G26650.1	Bra033861.1-P	AT1G32060.1	17947231
AT3G26650.1	Bra003499.1-P	AT3G62410.1	17947231
AT3G26650.1	Bra007678.1-P	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83635	Canola	plastid	98.68	98.68
Bra032939.1-P	Field mustard	plastid	84.74	96.41
AT3G26650.1	Thale cress	plastid	94.21	90.4
Bra019797.1-P	Field mustard	plastid	92.37	87.97
Bra026948.1-P	Field mustard	plastid	91.32	86.97
KRG94751	Soybean	extracellular, nucleus	87.63	82.63
KRH06774	Soybean	nucleus	87.37	82.38
VIT_14s0068g00680.t01	Wine grape	plastid	87.11	81.93
PGSC0003DMT400030050	Potato	cytosol	85.79	81.7
Solyc04g009030.2.1	Tomato	plastid	84.74	80.7
Os04t0459500-02	Rice	plastid	85.26	80.6
Zm00001d003429_P001	Maize	plastid	85.26	80.4
TraesCS2B01G342200.1	Wheat	plastid	83.95	79.55
TraesCS2D01G322900.1	Wheat	plastid	83.95	79.55
TraesCS2A01G344600.1	Wheat	golgi, plastid	83.68	79.3
GSMUA_Achr10P...	Banana	plastid	64.74	78.34
HORVU0Hr1G004830.6	Barley	plastid	83.68	77.94
Solyc02g020940.2.1	Tomato	plastid	82.89	77.02
KXG26468	Sorghum	plastid	84.21	76.56
Zm00001d025607_P001	Maize	cytosol, plastid	74.74	76.34
Zm00001d025599_P001	Maize	plastid	79.74	75.19
Zm00001d025593_P001	Maize	plastid	79.21	74.69
GSMUA_Achr6P16250_001	Banana	plastid	85.26	73.97
KRH70104	Soybean	plastid	50.79	69.93
Bra034927.1-P	Field mustard	plastid	73.16	62.05
Bra040213.1-P	Field mustard	cytosol	39.47	44.38
Bra016729.1-P	Field mustard	cytosol	39.47	44.25
Bra026904.1-P	Field mustard	cytosol	39.21	44.08
Bra040146.1-P	Field mustard	cytosol	38.95	43.79
Bra019722.1-P	Field mustard	cytosol	32.11	41.5
Bra008416.1-P	Field mustard	plastid	44.74	40.96
Bra026068.1-P	Field mustard	plastid	43.42	38.92
Bra003606.1-P	Field mustard	plastid	43.68	38.88

Protein Annotations

MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra025219	EnsemblPlants:Bra025219.1	EnsemblPlants:Bra025219.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	UniProt:M4E8W3	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI000253F68C	SEG:seg

Description

AT3G26650 (E=2e-102) GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding

Coordinates

chrA06:-:22707337..22708895

Molecular Weight (calculated)

40887.9 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.019

Length

380 amino acids

Sequence
(BLAST)

001: MALATFSVPK PSLQGFTDFS GLRSSSASLP FGKKLSSDEF VSAVTFQTSA MGSSGGYRKG VTEAKLKVAI NGFGRIGRNF LRCWHGRKDS PFDVIAINDT
101: GGVKQASHLL KYDSTLGIFD ADVKPSGDAA LSVDGKIIKV VSNRNPSLLP WKELGIDIVI EGTGVFVDRE GDIPTYVVGV NADAYNPDEP IISNASCTTN
201: CLAPFVKVLD QKFGIIKGTM TTTHSYTGDQ RLLDASHRDL RRARAAALNI VPTSTGAAKA VALVLPNLKG KLNGIALRVP TPNVSVVDLV VQVTKKTFAE
301: EVNAAFRESA EKELKGILEV CDEPLVSVDF RCSDVSSTID SSLTMVMGDD MVKVIAWYDN EWGYSQRVVD LADIVANNWK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.