Factsheet for Bra032939.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003499.1-P
Bra007678.1-P
Bra023235.1-P
Bra033861.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Bra023235.1-P	AT1G32060.1	17947231
AT3G26650.1	Bra033861.1-P	AT1G32060.1	17947231
AT3G26650.1	Bra003499.1-P	AT3G62410.1	17947231
AT3G26650.1	Bra007678.1-P	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48981	Canola	plastid	99.1	89.95
Bra025219.1-P	Field mustard	plastid	96.41	84.74
AT3G26650.1	Thale cress	plastid	91.92	77.53
Bra019797.1-P	Field mustard	plastid	90.42	75.69
Bra026948.1-P	Field mustard	plastid	89.82	75.19
VIT_14s0068g00680.t01	Wine grape	plastid	85.63	70.79
PGSC0003DMT400030050	Potato	cytosol	84.43	70.68
KRG94751	Soybean	extracellular, nucleus	85.03	70.47
KRH06774	Soybean	nucleus	84.73	70.22
Os04t0459500-02	Rice	plastid	84.13	69.9
Solyc04g009030.2.1	Tomato	plastid	83.23	69.67
Zm00001d003429_P001	Maize	plastid	83.83	69.48
TraesCS2B01G342200.1	Wheat	plastid	82.63	68.83
TraesCS2D01G322900.1	Wheat	plastid	82.63	68.83
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.34	68.58
HORVU0Hr1G004830.6	Barley	plastid	82.34	67.4
Solyc02g020940.2.1	Tomato	plastid	82.34	67.24
KXG26468	Sorghum	plastid	82.63	66.03
Zm00001d025593_P001	Maize	plastid	78.74	65.26
Zm00001d025599_P001	Maize	plastid	78.44	65.01
Zm00001d025607_P001	Maize	cytosol, plastid	72.16	64.78
GSMUA_Achr6P16250_001	Banana	plastid	83.23	63.47
GSMUA_Achr10P...	Banana	plastid	59.28	63.06
KRH70104	Soybean	plastid	46.11	55.8
Bra034927.1-P	Field mustard	plastid	70.36	52.46
Bra040213.1-P	Field mustard	cytosol	37.72	37.28
Bra016729.1-P	Field mustard	cytosol	37.72	37.17
Bra026904.1-P	Field mustard	cytosol	37.43	36.98
Bra040146.1-P	Field mustard	cytosol	37.13	36.69
Bra008416.1-P	Field mustard	plastid	43.41	34.94
Bra019722.1-P	Field mustard	cytosol	29.64	33.67
Bra003606.1-P	Field mustard	plastid	42.22	33.02
Bra026068.1-P	Field mustard	plastid	41.92	33.02

Protein Annotations

MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra032939	EnsemblPlants:Bra032939.1	EnsemblPlants:Bra032939.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	UniProt:M4EVV6	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0002545994	SEG:seg

Description

AT3G26650 (E=7e-100) GAPA, GAPA-1 | GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase/ protein binding

Coordinates

chrA02:-:22393081..22394618

Molecular Weight (calculated)

35873.7 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.027

Length

334 amino acids

Sequence
(BLAST)

001: MASATFSVPK PSLQGFTEFS GLRSSSASLP FGNKKLSSDE FVSAVTFQTS ADSPFDVIAI NDTGGVKQAS HLLKYDSTLG IFDADVKPSG DAALSVDGKI
101: IKIVSNRNPS LLPWKELGID ILQAKDIPTY AVGVNADAYN PDEPIISNAS CTTNCLAPFV KVLDQKFGII KGTMTTTHSY TGDQRLLDAS HRDLRRARAA
201: ALNIVPTSTG AAKAVALVLP NLKGKHNGIA LRVPTPNVSV VDLVVQVTKK TFAEEVNAAF RNSAEKELKG ILKVCDEPLV SVDFRCSDVS STIDSSLTMV
301: MGDDMVKVIA WYDNEWGYSQ RVVDLADIVA NNWK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.