Factsheet for Zm00001d025593_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002454_P002
Zm00001d028880_P001
Zm00001d044925_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Zm00001d002454_P002	AT1G32060.1	17947231
AT3G26650.1	Zm00001d028880_P001	AT3G62410.1	17947231
AT3G26650.1	Zm00001d044925_P001	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025599_P001	Maize	plastid	98.01	98.01
Zm00001d025607_P001	Maize	cytosol, plastid	88.59	95.97
Zm00001d003429_P001	Maize	plastid	88.59	88.59
Os04t0459500-02	Rice	plastid	86.35	86.57
KXG26468	Sorghum	plastid	86.6	83.49
TraesCS2B01G342200.1	Wheat	plastid	82.63	83.04
TraesCS2D01G322900.1	Wheat	plastid	82.63	83.04
TraesCS2A01G344600.1	Wheat	golgi, plastid	82.38	82.79
HORVU0Hr1G004830.6	Barley	plastid	82.38	81.37
Bra026948.1-P	Field mustard	plastid	79.4	80.2
CDY16038	Canola	plastid	78.91	79.7
CDY26599	Canola	plastid	78.91	79.7
CDY28536	Canola	plastid	74.94	79.47
CDX98028	Canola	plastid	78.66	79.45
CDY19412	Canola	plastid	78.66	79.45
AT3G26650.1	Thale cress	plastid	77.92	79.29
CDY13649	Canola	plastid	74.69	79.21
CDX83635	Canola	plastid	74.69	79.21
Bra025219.1-P	Field mustard	plastid	74.69	79.21
Bra019797.1-P	Field mustard	plastid	78.41	79.2
Bra032939.1-P	Field mustard	plastid	65.26	78.74
CDY48981	Canola	plastid	70.72	77.45
PGSC0003DMT400030050	Potato	cytosol	76.67	77.44
Solyc04g009030.2.1	Tomato	plastid	76.67	77.44
KRH06774	Soybean	nucleus	77.42	77.42
KRG94751	Soybean	extracellular, nucleus	77.42	77.42
GSMUA_Achr10P...	Banana	plastid	59.8	76.75
VIT_14s0068g00680.t01	Wine grape	plastid	76.92	76.73
Solyc02g020940.2.1	Tomato	plastid	75.93	74.82
GSMUA_Achr6P16250_001	Banana	plastid	77.67	71.46
AT1G12900.5	Thale cress	endoplasmic reticulum	77.67	70.98
KRH70104	Soybean	plastid	45.91	67.03
Zm00001d027488_P001	Maize	extracellular, plastid	66.75	59.91
Zm00001d025601_P001	Maize	plastid	23.33	54.97
Zm00001d049641_P001	Maize	plasma membrane, plastid	36.48	43.62
Zm00001d051001_P002	Maize	cytosol	36.23	43.32
Zm00001d035156_P003	Maize	cytosol	36.72	42.41
Zm00001d015383_P001	Maize	plastid	38.21	36.75
Zm00001d053798_P004	Maize	plastid	36.23	35.18
Zm00001d017121_P001	Maize	plastid	36.23	28.63
Zm00001d015885_P001	Maize	mitochondrion	10.67	28.29
Zm00001d019945_P001	Maize	plastid	6.2	22.52
Zm00001d021798_P001	Maize	cytosol	12.41	19.23
Zm00001d016297_P001	Maize	cytosol	6.45	18.98

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1D6J815
ProteinID:AQK44063.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000842B90C	EnsemblPlantsGene:Zm00001d025593	EnsemblPlants:Zm00001d025593_P001
EnsemblPlants:Zm00001d025593_T001	SEG:seg	:	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase GAPA1 chloroplastic

Coordinates

chr10:+:123448537..123450324

Molecular Weight (calculated)

43853.4 Da

IEP (calculated)

5.988

GRAVY (calculated)

-0.071

Length

403 amino acids

Sequence
(BLAST)

001: MLSATMVPLQ QVQGGGLSEF SGLLRSSASL PMRWNATSDE FMSAVSFRNH AIGTSGGRLR RAPTEAKLKV AMNGFGRIGR NLMRCWHGRD NDSPLDVIAI
101: NDTGDVKQAS YLLKYDSMLG IFDADVEPVG DNAISVDGKV IKVVSDRNPS NLPWGELSVD LFIEGTGVFV DHESAGKHIQ AGAKKVLITA PDKGNIPTYV
201: VGVNADQYNP DEPIISNASC TTNCRVPFVK VLDQKFGIIK GTMTTTHFYT CDQRLLDASH RDLRRARAAA LNIVPTSTSA AKAVALVLPN LKGKLNGIAL
301: WVPTPNVSVL DLVVQVSRKT LAEEVNQAFR DAAANELQGI LEVCDVPLVS VDFRCSDFSS TIDASLTMVM GDDMVKVISW YDKEWGYSQR VVDLDDICAN
401: QWK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.