Factsheet for Zm00001d053798_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04595	Sorghum	plastid	88.19	88.62
Zm00001d015383_P001	Maize	plastid	86.99	86.16
Os02t0171100-01	Rice	extracellular, plastid	84.58	85.4
TraesCS6D01G146900.1	Wheat	plastid	85.54	85.34
TraesCS6A01G157500.1	Wheat	plastid	85.3	85.1
TraesCS6B01G185400.1	Wheat	plastid	84.1	83.89
HORVU6Hr1G032070.2	Barley	plastid	83.13	82.93
Bra008416.1-P	Field mustard	plastid	73.01	73.01
CDX79324	Canola	plastid	73.98	72.92
CDY25342	Canola	plastid	72.77	72.77
CDX67990	Canola	plastid	73.73	72.68
CDY22281	Canola	plastid	73.25	72.55
AT1G79530.1	Thale cress	plastid	73.49	72.27
AT1G16300.1	Thale cress	plastid	72.77	71.9
Zm00001d049641_P001	Maize	plasma membrane, plastid	58.31	71.81
KRH66238	Soybean	plastid	72.29	71.77
KRH07324	Soybean	extracellular, nucleus	72.29	71.77
Bra026068.1-P	Field mustard	plastid	73.25	71.7
CDY33343	Canola	plastid	73.49	71.6
Bra003606.1-P	Field mustard	plastid	73.49	71.43
CDY35080	Canola	plastid	73.25	71.36
Zm00001d051001_P002	Maize	cytosol	57.35	70.62
Zm00001d035156_P003	Maize	cytosol	58.07	69.05
Zm00001d019945_P001	Maize	plastid	13.49	50.45
Zm00001d017121_P001	Maize	plastid	57.35	46.67
Zm00001d003429_P001	Maize	plastid	37.83	38.96
Zm00001d027488_P001	Maize	extracellular, plastid	40.72	37.64
Zm00001d025607_P001	Maize	cytosol, plastid	33.73	37.63
Zm00001d025593_P001	Maize	plastid	35.18	36.23
Zm00001d025599_P001	Maize	plastid	35.18	36.23
Zm00001d025601_P001	Maize	plastid	14.46	35.09
Zm00001d015885_P001	Maize	mitochondrion	12.05	32.89
Zm00001d021798_P001	Maize	cytosol	20.48	32.69
Zm00001d016297_P001	Maize	cytosol	8.67	26.28

Protein Annotations

MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1D6QSB3	ProteinID:AQK60375.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	UniParc:UPI0008453BB9	EnsemblPlantsGene:Zm00001d053798	EnsemblPlants:Zm00001d053798_P004	EnsemblPlants:Zm00001d053798_T004	SEG:seg

Description

Glyceraldehyde-3-phosphate dehydrogenase GAPCP1 chloroplastic

Coordinates

chr4:-:241317382..241322330

Molecular Weight (calculated)

43907.2 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.070

Length

415 amino acids

Sequence
(BLAST)

001: MAALSVPLHA AAGSRAAAAD PVKVPCVRST GSAHFGRAFP SVAVSSLAAR HIEPMRAIAT QAPPAVPQYL SGEKTKIGIN GFGRIGRLVL RIATSRDDIE
101: VVAVNDPFVD AKYMAYMFKY DSTHGPFKGS ICVVDDSTLE INGKKVTITS KRDPAEIPWG NFGAEYVVES SGVFTTTDKA SAHLKGGAKK VVISAPSADA
201: PMFVVGVNEN SYDSKMNVVS NASCTTNCLA PLAKVVHEEF GIVEGLMTTV HATTATQKTV DGPSMKDWRG GRGAGQNIIP SSTGAAKAVG KVLPELNGKL
301: TGMAFRVPTP NVSVVDLTCR IEKNASYDDV KAAIKEQPCA YYQPSYGGSY AAYLFSRAAS EGALKGILGY TDEDVVSNDF VGDSRSSIFD AKAGIGLSSS
401: FMKLVSWYDN EWGYR

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.