CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66238	Soybean	plastid	95.22	95.22
GSMUA_Achr5P00240_001	Banana	cytosol	45.22	90.43
CDY25342	Canola	plastid	79.19	79.76
CDX67990	Canola	plastid	80.14	79.57
CDX79324	Canola	plastid	80.14	79.57
Bra008416.1-P	Field mustard	plastid	78.95	79.52
AT1G79530.1	Thale cress	plastid	80.14	79.38
CDY22281	Canola	plastid	79.19	79.0
AT1G16300.1	Thale cress	plastid	78.95	78.57
Bra003606.1-P	Field mustard	plastid	80.14	78.45
PGSC0003DMT400029242	Potato	plastid	78.47	78.28
TraesCS7A01G478100.2	Wheat	plastid	76.56	78.05
Solyc10g005510.2.1	Tomato	plastid	78.23	78.04
TraesCS7B01G380500.1	Wheat	plastid	76.32	78.0
CDY33343	Canola	plastid	79.43	77.93
CDY35080	Canola	plastid	79.43	77.93
VIT_19s0085g00600.t01	Wine grape	plastid	79.9	77.86
Bra026068.1-P	Field mustard	plastid	78.95	77.83
Os02t0171100-01	Rice	extracellular, plastid	76.08	77.37
EES04595	Sorghum	plastid	75.6	76.51
Os06t0666600-01	Rice	extracellular, plastid	75.36	75.9
Zm00001d015383_P001	Maize	plastid	75.84	75.66
TraesCS6D01G146900.1	Wheat	plastid	75.12	75.48
TraesCS6A01G157500.1	Wheat	plastid	74.64	75.0
KRH37937	Soybean	plastid	15.79	75.0
TraesCS6B01G185400.1	Wheat	plastid	74.4	74.76
HORVU6Hr1G032070.2	Barley	plastid	74.16	74.52
TraesCS7D01G465500.1	Wheat	plastid	75.84	73.38
KRH31426	Soybean	endoplasmic reticulum	59.33	72.94
KRG97466	Soybean	endoplasmic reticulum, nucleus	59.09	72.65
Zm00001d053798_P004	Maize	plastid	71.77	72.29
KRH57621	Soybean	endoplasmic reticulum	57.89	71.81
KRG94350	Soybean	cytosol, mitochondrion	57.66	71.51
KRH63724	Soybean	nucleus	57.18	70.71
KRH63725	Soybean	endoplasmic reticulum, nucleus	57.18	70.71
KRH54234	Soybean	endoplasmic reticulum, nucleus	56.94	70.41
KRH54227	Soybean	endoplasmic reticulum, nucleus	56.7	70.12
HORVU7Hr1G108580.4	Barley	plastid	67.22	68.54
GSMUA_Achr5P00230_001	Banana	plastid	28.23	53.64
KRH08444	Soybean	cytosol	28.23	45.21
KRG94751	Soybean	extracellular, nucleus	42.82	44.42
KRH06774	Soybean	nucleus	42.58	44.17
KRH60895	Soybean	nucleus, plastid	44.5	41.24
KRH51576	Soybean	nucleus, plastid	44.5	41.06
KRH74912	Soybean	cytosol	13.64	40.71
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	12.44	39.1
KRH70104	Soybean	plastid	23.45	35.51
KRH26225	Soybean	mitochondrion	23.92	31.55

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:100789951	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720
EMBL:ACUP02009963	EnsemblPlantsGene:GLYMA_16G081400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I1MM44	EnsemblPlants:KRH07324	ProteinID:KRH07324	ProteinID:KRH07324.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF46	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000233AEF4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:+:8745706..8751800

Molecular Weight (calculated)

44812.6 Da

IEP (calculated)

8.915

GRAVY (calculated)

-0.085

Length

418 amino acids

Sequence
(BLAST)

001: MAANSLLRSS LLAPSSSDLS KVFTNASGCN LKSKGLQTSI FGTSIQCDSL VLQNCNARHI QRIKATATEI PLPTQQSRST GKTRVGINGF GRIGRLVLRV
101: ATSRDDVDVV AINDPFIDAK YMAYMFKYDS THGPFKGTIK ILDDSTLEIN GKQVKVVSKR DPAEIPWSDF GAEYVIESSG VFTTVEKASS HLKAGAKKVV
201: ISAPSADAPM FVVGVNEKTY NPKMDIVSNA SCTTNCLAPL AKVVHEEFII VEGLMTTVHA TTATQKTVDG PSMKDWRGGR GAAQNIIPSS TGAAKAVGKV
301: LPELNGKLTG MAFRVPTPNV SVVDLTCRLK KNASYEDVKA AIKYASEGPL KGILGYTDED VVSNDFVGDS RSSIFDAKAG IALSASFVKL VSWYDNEWGY
401: SNRVLDLIEH MALVGAQN

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.