CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67990	Canola	plastid	98.57	98.57
CDY25342	Canola	plastid	92.16	93.49
CDY22281	Canola	plastid	92.64	93.08
AT1G79530.1	Thale cress	plastid	91.69	91.47
GSMUA_Achr5P00240_001	Banana	cytosol	45.13	90.91
CDY35080	Canola	plastid	88.36	87.32
CDY33343	Canola	plastid	87.89	86.85
KRH66238	Soybean	plastid	80.05	80.62
KRH07324	Soybean	extracellular, nucleus	79.57	80.14
Solyc10g005510.2.1	Tomato	plastid	79.33	79.71
Os02t0171100-01	Rice	extracellular, plastid	77.2	79.08
TraesCS7A01G478100.2	Wheat	plastid	76.96	79.02
PGSC0003DMT400029242	Potato	plastid	78.62	79.0
TraesCS7B01G380500.1	Wheat	plastid	76.72	78.97
EES04595	Sorghum	plastid	77.43	78.93
TraesCS6D01G146900.1	Wheat	plastid	77.91	78.85
TraesCS6A01G157500.1	Wheat	plastid	77.43	78.37
HORVU6Hr1G032070.2	Barley	plastid	77.2	78.12
TraesCS6B01G185400.1	Wheat	plastid	76.96	77.88
Zm00001d015383_P001	Maize	plastid	77.43	77.8
Os06t0666600-01	Rice	extracellular, plastid	76.48	77.59
VIT_19s0085g00600.t01	Wine grape	plastid	78.86	77.39
TraesCS7D01G465500.1	Wheat	plastid	76.72	74.77
Zm00001d053798_P004	Maize	plastid	72.92	73.98
CDY49358	Canola	cytosol, mitochondrion	57.72	72.32
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	57.72	69.83
HORVU7Hr1G108580.4	Barley	plastid	67.7	69.51
CDY42906	Canola	cytosol	58.19	69.41
CDX74199	Canola	endoplasmic reticulum	57.96	69.32
CDY50169	Canola	cytosol	57.48	65.05
CDY21098	Canola	cytosol	57.48	64.88
CDX98100	Canola	cytosol, mitochondrion, peroxisome	48.46	64.15
CDY26651	Canola	mitochondrion, peroxisome	48.93	61.86
CDY30032	Canola	cytosol	57.72	61.83
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	49.17	60.7
GSMUA_Achr5P00230_001	Banana	plastid	29.45	56.36
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	57.48	56.28
CDY29987	Canola	cytosol, peroxisome, plastid	48.93	54.79
CDY69523	Canola	cytosol	43.47	45.52
CDY19412	Canola	plastid	41.33	43.61
CDX98028	Canola	plastid	41.33	43.61
CDY28536	Canola	plastid	38.95	43.16
CDY13649	Canola	plastid	38.95	43.16
CDX83635	Canola	plastid	38.95	43.16
CDY26599	Canola	plastid	40.86	43.11
CDY16038	Canola	plastid	40.86	43.11
CDY48981	Canola	plastid	37.53	42.93
CDY35800	Canola	plastid	45.61	42.86
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	13.3	42.11

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078CTE8
EnsemblPlants:CDX79324	ProteinID:CDX79324	ProteinID:CDX79324.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00132002001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	MetaCyc:PWY-1042	MetaCyc:PWY-5484
MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534
UniPathway:UPA00109	UniParc:UPI0004EEF946	SEG:seg	:	:	:

Description

BnaC06g19790D

Coordinates

chrLK031817:-:1355111..1358454

Molecular Weight (calculated)

44477.8 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.071

Length

421 amino acids

Sequence
(BLAST)

001: MASSSLLRSA ATAAAPRADF FSSPSCDHSK VSSSSFGFSR SFSGAAIATG PSSSLQRCNA RAVQPIKATA TQVPPAVQRS SSTGKTKVGI NGFGRIGRLV
101: LRIATSRDDI EVVAVNDPFI DAKYMAYMLR YDSTHGNFKG TINVVDDSTL EINGKKVNVV SKRDPAEIPW ADLGADYVVE SSGVFTTLSK AASHLKGGAK
201: KVIISAPSAD APMFVVGVNE KTYQPNMDIV SNASCTTNCL APLAKVVHEE FGILEGLMTT VHATTATQKT VDGPSMKDWR GGRGASQNII PSSTGAAKAV
301: GKVLPELNGK LTGMAFRVPT PNVSVVDLTC RLEKGASYED VKAAIKFASE GPLKGILGYT DEDVVSNDFV GDSRSSIFDA NAGIGLSKSF VKLVSWYDNE
401: WGYSNRVLDL IEHMALVAAS R

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.