CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35080	Canola	plastid	97.89	97.89
Bra026068.1-P	Field mustard	plastid	96.24	96.7
AT1G16300.1	Thale cress	plastid	92.49	93.81
GSMUA_Achr5P00240_001	Banana	cytosol	43.9	89.47
CDY25342	Canola	plastid	85.68	87.95
CDX79324	Canola	plastid	86.85	87.89
CDY22281	Canola	plastid	86.15	87.59
CDX67990	Canola	plastid	86.15	87.17
Solyc10g005510.2.1	Tomato	plastid	79.81	81.15
KRH66238	Soybean	plastid	79.34	80.86
PGSC0003DMT400029242	Potato	plastid	78.64	79.95
KRH07324	Soybean	extracellular, nucleus	77.93	79.43
TraesCS7B01G380500.1	Wheat	plastid	75.59	78.73
TraesCS7A01G478100.2	Wheat	plastid	75.35	78.29
VIT_19s0085g00600.t01	Wine grape	plastid	78.64	78.09
EES04595	Sorghum	plastid	75.35	77.72
TraesCS6A01G157500.1	Wheat	plastid	75.82	77.64
TraesCS6D01G146900.1	Wheat	plastid	75.82	77.64
Os02t0171100-01	Rice	extracellular, plastid	74.88	77.62
Zm00001d015383_P001	Maize	plastid	75.82	77.09
TraesCS6B01G185400.1	Wheat	plastid	75.12	76.92
HORVU6Hr1G032070.2	Barley	plastid	74.88	76.68
Os06t0666600-01	Rice	extracellular, plastid	74.41	76.39
TraesCS7D01G465500.1	Wheat	plastid	75.35	74.31
Zm00001d053798_P004	Maize	plastid	71.6	73.49
CDY49358	Canola	cytosol, mitochondrion	56.81	72.02
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	56.81	69.54
CDY42906	Canola	cytosol	57.28	69.12
CDX74199	Canola	endoplasmic reticulum	57.04	69.03
HORVU7Hr1G108580.4	Barley	plastid	65.96	68.54
CDY50169	Canola	cytosol	56.57	64.78
CDY21098	Canola	cytosol	56.57	64.61
CDX98100	Canola	cytosol, mitochondrion, peroxisome	47.65	63.84
CDY26651	Canola	mitochondrion, peroxisome	48.12	61.56
CDY30032	Canola	cytosol	56.57	61.32
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	48.36	60.41
GSMUA_Achr5P00230_001	Banana	plastid	29.81	57.73
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	56.57	56.05
CDY29987	Canola	cytosol, peroxisome, plastid	48.12	54.52
CDY69523	Canola	cytosol	41.78	44.28
CDY19412	Canola	plastid	40.85	43.61
CDX98028	Canola	plastid	40.85	43.61
CDY26599	Canola	plastid	40.38	43.11
CDY16038	Canola	plastid	40.38	43.11
CDY28536	Canola	plastid	38.26	42.89
CDY13649	Canola	plastid	38.26	42.89
CDX83635	Canola	plastid	38.26	42.89
CDY48981	Canola	plastid	36.85	42.66
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	13.15	42.11
CDY35800	Canola	plastid	43.19	41.07

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078H920
UniProt:A0A078H920	EnsemblPlants:CDY33343	ProteinID:CDY33343	ProteinID:CDY33343.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00054181001
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46
MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109	UniParc:UPI0004EB0DD2	SEG:seg	:

Description

BnaC05g12400DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078H920]

Coordinates

chrLK032312:-:169602..172897

Molecular Weight (calculated)

45657.2 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.092

Length

426 amino acids

Sequence
(BLAST)

001: MAFSSLLRSA ATSAAAPRVE LYTSPSYDHF QVTSSLGFSH NLTSSRFSGA AVSTDSSSSL QICNARSVQP IKATATEAPP AVYRPRSSGK TKVGINGFGR
101: IGRLVLRIAT FRDDIEVVAV NDPFIDAKYM AYMFKYDSTH GNYKGTINVL DDSTLEINGK EVKVVSKRDP AEIPWADLGA DYVVESSGVF TTLAKASSHL
201: KGGAKKVIIS APSADAPMFV VGVNERTYRP NMDIVSNASC TTNCLAPLAK VVHEEFGILE GLMTTVHATT ATQKTVDGPS MKDWRGGRGA SQNIIPSSTG
301: AAKAVGKVLP ELNGKLTGMA FRVPTPNVSV VDLTCRLEKD ASYEDVKAAI KFASEGPLRG IMGYTEEDVV SSDFVGDSRS SIFDANAGIG LSKSFMKLVS
401: WYDNEWGYSN RVLDLIEHMA LVSAIR

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.