Factsheet for Solyc10g005510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029242	Potato	plastid	97.37	97.37
GSMUA_Achr5P00240_001	Banana	cytosol	46.06	92.34
CDY25342	Canola	plastid	79.95	80.72
AT1G79530.1	Thale cress	plastid	80.91	80.33
Bra008416.1-P	Field mustard	plastid	79.24	80.0
AT1G16300.1	Thale cress	plastid	80.19	80.0
CDY22281	Canola	plastid	79.95	79.95
CDY33343	Canola	plastid	81.15	79.81
Bra026068.1-P	Field mustard	plastid	80.67	79.72
CDY35080	Canola	plastid	80.91	79.58
VIT_19s0085g00600.t01	Wine grape	plastid	81.38	79.49
EES04595	Sorghum	plastid	78.28	79.42
CDX67990	Canola	plastid	79.71	79.33
CDX79324	Canola	plastid	79.71	79.33
KRH66238	Soybean	plastid	79.0	79.19
Os02t0171100-01	Rice	extracellular, plastid	77.33	78.83
TraesCS6D01G146900.1	Wheat	plastid	78.04	78.61
KRH07324	Soybean	extracellular, nucleus	78.04	78.23
TraesCS6A01G157500.1	Wheat	plastid	77.57	78.12
Bra003606.1-P	Field mustard	plastid	79.47	77.99
TraesCS7B01G380500.1	Wheat	plastid	75.89	77.75
TraesCS7A01G478100.2	Wheat	plastid	75.89	77.56
TraesCS6B01G185400.1	Wheat	plastid	76.85	77.4
HORVU6Hr1G032070.2	Barley	plastid	76.61	77.16
Solyc05g014480.2.1	Tomato	cytosol	6.92	76.32
Os06t0666600-01	Rice	extracellular, plastid	75.18	75.9
Solyc05g014470.2.1	Tomato	extracellular, plastid	59.9	74.26
TraesCS7D01G465500.1	Wheat	plastid	75.89	73.61
Solyc03g111010.2.1	Tomato	plastid	58.47	72.7
Solyc06g071920.2.1	Tomato	nucleus	58.47	72.7
Solyc05g005820.2.1	Tomato	plastid, unclear	58.23	72.4
HORVU7Hr1G108580.4	Barley	plastid	67.06	68.54
Solyc01g098950.1.1	Tomato	cytosol	39.86	60.07
GSMUA_Achr5P00230_001	Banana	plastid	29.83	56.82
Solyc02g020940.2.1	Tomato	plastid	41.77	42.79
Solyc04g009030.2.1	Tomato	plastid	40.57	42.61
Solyc03g111000.2.1	Tomato	cytosol	17.18	41.38
Solyc12g094640.1.1	Tomato	plastid	43.2	40.22
Solyc04g082630.2.1	Tomato	plastid	42.96	37.82
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	11.93	37.59
Zm00001d015885_P001	Maize	mitochondrion	12.89	35.53
Zm00001d021798_P001	Maize	cytosol	19.09	30.77
Zm00001d016297_P001	Maize	cytosol	9.55	29.2

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4CX83
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF46	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc10g005510.2	EnsemblPlants:Solyc10g005510.2.1
TIGRFAMs:TIGR01534	UniParc:UPI000276C768	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4CX83]

Coordinates

chr10:-:417823..423467

Molecular Weight (calculated)

44514.1 Da

IEP (calculated)

8.655

GRAVY (calculated)

-0.065

Length

419 amino acids

Sequence
(BLAST)

001: MAFSSLLKPA ASFVRPSHRS QVSCAGLHHS SNSVKLQSSI FGDAVTILQS SSLQKSGACS IQPIRATATE LPPTVPRSQT GGKTRVGING FGRIGRLVLR
101: IATFRDDIEV VAVNDPFIDA KYMAYMLKYD STHGVYSGSI SVLDDSTLEI NGKQIKVSSK RDPADIPWGD LGADYVVESS GVFTTIDKAS AHKKGGAKKV
201: VISAPSADAP MFVVGVNEKT YKANMDVVSN ASCTTNCLAP LAKVVHEEFG IVEGLMTTVH ATTATQKTVD GPSMKDWRGG RGAGQNIIPS STGAAKAVGK
301: VLPELNGKLT GMAFRVPTPN VSVVDLTCRL DKSASYDDVK AAIKYASEGP LKGILGYTDE DVVSNDFVGD SRSSIFDAKA GIGLSKSFVK LVSWYDNEWG
401: YSNRVLDLIE HMALVASIH

Best Arabidopsis Sequence Match ( AT1G16300.1 )
(BLAST)

001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR

Arabidopsis Description

GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.