Factsheet for Solyc05g005820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010575	Potato	cytosol	99.41	99.41
Solyc06g071920.2.1	Tomato	nucleus	86.05	86.05
Solyc03g111010.2.1	Tomato	plastid	85.46	85.46
KRG94350	Soybean	cytosol, mitochondrion	84.57	84.57
KRH57621	Soybean	endoplasmic reticulum	84.57	84.57
Solyc05g014470.2.1	Tomato	extracellular, plastid	84.27	84.02
Solyc05g014480.2.1	Tomato	cytosol	8.61	76.32
Solyc01g098950.1.1	Tomato	cytosol	59.35	71.94
Solyc10g005510.2.1	Tomato	plastid	72.4	58.23
Solyc03g111000.2.1	Tomato	cytosol	26.41	51.15
Solyc04g009030.2.1	Tomato	plastid	45.4	38.35
Solyc02g020940.2.1	Tomato	plastid	45.4	37.41
Solyc12g094640.1.1	Tomato	plastid	46.29	34.67
Solyc04g082630.2.1	Tomato	plastid	46.88	33.19

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4BWA9
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc05g005820.2
EnsemblPlants:Solyc05g005820.2.1	TIGRFAMs:TIGR01534	UniParc:UPI0002766FFA	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BWA9]

Coordinates

chr5:-:648534..651277

Molecular Weight (calculated)

36471.9 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.104

Length

337 amino acids

Sequence
(BLAST)

001: MGKVKIGING FGRIGRLVAR VALQSDDIEL VAVNDPFITT EYMTYMFKYD TVHGQWKKHE LKVKDDKTLL FGDKPVKVFG ARNPEEIPWG EAGADYVVES
101: TGVFTDKDKA AAHLKGGAKR VVISAPSKDA PMFVMGVNEK EYKADINIVS NASCTTNCLA PLAKVINDKF GIVEGLMTTV HSITATQKTV DGPSMKDWRG
201: GRAAAHNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTAR IQKSATYDEI KAALKAESQG NMKGILGYTE DDVVSSDFIG DCRSSIFDAK
301: AGIALNGNFV KVVSWYDNEW GYSNRVIDLI RHMSTVV

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.