Factsheet for PGSC0003DMT400010575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005820.2.1	Tomato	plastid, unclear	99.41	99.41
PGSC0003DMT400069357	Potato	cytosol	86.35	86.35
PGSC0003DMT400039449	Potato	extracellular	86.35	86.35
KRG94350	Soybean	cytosol, mitochondrion	84.87	84.87
KRH57621	Soybean	endoplasmic reticulum	84.87	84.87
PGSC0003DMT400044944	Potato	extracellular	84.57	84.32
HORVU2Hr1G123170.1	Barley	cytosol	9.5	84.21
HORVU2Hr1G123240.1	Barley	cytosol	9.5	84.21
HORVU6Hr1G089870.1	Barley	cytosol	9.79	78.57
PGSC0003DMT400044945	Potato	cytosol	37.98	72.32
VIT_14s0006g03030.t01	Wine grape	extracellular	18.69	70.0
PGSC0003DMT400029242	Potato	plastid	72.4	58.23
GSMUA_Achr5P17220_001	Banana	extracellular	14.54	44.55
PGSC0003DMT400030050	Potato	cytosol	45.4	38.35
KXG19697	Sorghum	cytosol	10.68	37.11
PGSC0003DMT400025881	Potato	plastid	46.29	34.67
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	46.29	34.67
KXG28726	Sorghum	cytosol	15.13	33.55
PGSC0003DMT400087142	Potato	plastid	19.58	29.6

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:102583988	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
UniProt:M0ZYA4	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400004130	PGSC:PGSC0003DMG400004130
EnsemblPlants:PGSC0003DMT400010575	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000295AEC4	RefSeq:XP_006355964.1

Description

Glyceraldehyde-3-phosphate dehydrogenase C subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400004130]

Coordinates

chr5:+:7584954..7588163

Molecular Weight (calculated)

36486.9 Da

IEP (calculated)

8.421

GRAVY (calculated)

-0.104

Length

337 amino acids

Sequence
(BLAST)

001: MGKVKIGING FGRIGRLVAR VALQSDDIEL VAVNDPFITT EYMTYMFKYD TVHGQWKKHE LKVKDEKTLL FGDKPVKVFG ARNPEEIPWG EAGADYVVES
101: TGVFTDKDKA AAHLKGGAKR VVISAPSKDA PMFVMGVNEK EYKADINIVS NASCTTNCLA PLAKVINDKF GIVEGLMTTV HSITATQKTV DGPSMKDWRG
201: GRAAAHNIIP SSTGAAKAVG KVLPALNGKL TGMAFRVPTV DVSVVDLTAR IQKSATYDEI KAALKAESEG NMKGILGYTE DDVVSSDFIG DCRSSIFDAK
301: AGIALNGNFV KVVSWYDNEW GYSNRVIDLI RHMSTVV

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.