Factsheet for PGSC0003DMT400075608

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400025881
PGSC0003DMT400075608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	PGSC0003DMT400025881	AT1G42970.1	21798944
AT1G42970.1	PGSC0003DMT400075608	AT1G42970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094640.1.1	Tomato	plastid	99.33	99.33
PGSC0003DMT400025881	Potato	plastid	92.89	92.89
VIT_18s0122g00960.t01	Wine grape	plastid	90.22	89.62
CDY69523	Canola	cytosol	79.56	89.05
GSMUA_Achr11P...	Banana	mitochondrion	77.56	88.8
AT1G42970.1	Thale cress	plastid	86.44	87.02
KRH60895	Soybean	nucleus, plastid	87.11	86.92
Bra034927.1-P	Field mustard	plastid	86.44	86.83
CDY35800	Canola	plastid	86.44	86.83
KRH51576	Soybean	nucleus, plastid	87.33	86.75
GSMUA_Achr11P...	Banana	plastid	85.56	85.18
KXG40264	Sorghum	plastid	81.56	82.66
TraesCS5A01G495100.1	Wheat	golgi, plastid	81.33	82.43
Os03t0129300-01	Rice	extracellular, plastid	81.11	82.21
TraesCS4D01G319400.1	Wheat	plastid	81.11	82.21
TraesCS4B01G323000.1	Wheat	plastid	80.89	81.98
HORVU4Hr1G082700.4	Barley	plastid	80.67	81.76
Zm00001d027488_P001	Maize	extracellular, plastid	80.89	81.07
PGSC0003DMT400030050	Potato	cytosol	66.89	75.44
KRH74912	Soybean	cytosol	22.44	72.14
PGSC0003DMT400087142	Potato	plastid	28.0	56.5
PGSC0003DMT400039449	Potato	extracellular	36.67	48.96
PGSC0003DMT400044944	Potato	extracellular	36.0	47.93
PGSC0003DMT400069357	Potato	cytosol	35.11	46.88
PGSC0003DMT400010575	Potato	cytosol	34.67	46.29
PGSC0003DMT400029242	Potato	plastid	40.0	42.96
PGSC0003DMT400044945	Potato	cytosol	12.89	32.77

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	EntrezGene:102606161	Gene3D:3.30.360.10	Gene3D:3.40.50.720
ProteinID:CBL43264	ProteinID:CBL43264.1	InterPro:DUF_CP12	EMBL:FN691929	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M1CVH1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02672	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400029406	PGSC:PGSC0003DMG400029406	EnsemblPlants:PGSC0003DMT400075608
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000295BFA7	RefSeq:XP_006342537.1	SEG:seg	:

Description

Glyceraldehyde-3-phosphate dehydrogenase B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400029406]

Coordinates

chr12:+:57465469..57468885

Molecular Weight (calculated)

47929.2 Da

IEP (calculated)

7.686

GRAVY (calculated)

-0.043

Length

450 amino acids

Sequence
(BLAST)

001: MASHAALAPS RIPTSTRLLS KNSYSFPTQC FSKKFEVAEF SGLRSSGCVT FCNKESSFFD VVSAQLTPKT TGSAGPVKGE TVAKLKVAIN GFGRIGRNFL
101: RCWHGRKDSP LDVVVVNDSG GVKNASHLLK YDSMLGTFKA DVKIVDNETI SVDGKNIKVV SSRDPLKLPW AELGIDIVIE GTGVFVDGPG AGKHIQAGAK
201: KVIITAPAKG ADIPTYVIGV NEQDYSHEVA NIVSNASCTT NCLAPFAKIL DEEFGIVKGT MTTTHSYTGD QRLLDASHRD LRRARAAALN IVPTSTGAAK
301: AVSLVLPQLK GKLNGIALRV PTPNVSVVDL VINVAKKGIS AEDVNAAFRK AADGPLNGIL AVCDEPLVSV DFRCSDVSTT IDSSLTMVMG DDMVKIVAWY
401: DNEWGYSQRV VDLAHLVASK WPGSAAEGSG DALEDYCKTN PADKECKVYE

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.