Factsheet for GSMUA_Achr11P22300_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	GSMUA_Achr11P...	AT1G42970.1	21798944
AT1G42970.1	GSMUA_Achr11P...	AT1G42970.1	21798944
AT1G42970.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT1G42970.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT1G42970.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69523	Canola	cytosol	87.79	85.82
GSMUA_Achr11P...	Banana	plastid	94.15	81.86
VIT_18s0122g00960.t01	Wine grape	plastid	90.84	78.81
KRH60895	Soybean	nucleus, plastid	90.08	78.49
PGSC0003DMT400025881	Potato	plastid	89.31	78.0
KRH51576	Soybean	nucleus, plastid	89.82	77.92
Bra034927.1-P	Field mustard	plastid	88.8	77.9
CDY35800	Canola	plastid	88.8	77.9
AT1G42970.1	Thale cress	plastid	88.3	77.63
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	88.8	77.56
Solyc12g094640.1.1	Tomato	plastid	88.55	77.33
Os03t0129300-01	Rice	extracellular, plastid	86.77	76.8
KXG40264	Sorghum	plastid	86.26	76.35
TraesCS4D01G319400.1	Wheat	plastid	84.73	75.0
Zm00001d027488_P001	Maize	extracellular, plastid	85.5	74.83
TraesCS5A01G495100.1	Wheat	golgi, plastid	84.48	74.77
TraesCS4B01G323000.1	Wheat	plastid	84.48	74.77
HORVU4Hr1G082700.4	Barley	plastid	84.48	74.77
KRH74912	Soybean	cytosol	26.46	74.29
Solyc04g082630.2.1	Tomato	plastid	89.57	73.95
GSMUA_Achr10P...	Banana	plastid	51.65	64.65
GSMUA_Achr6P16250_001	Banana	plastid	70.23	63.01
GSMUA_Achr5P00240_001	Banana	cytosol	27.99	52.63
GSMUA_Achr11P...	Banana	cytosol	40.46	46.09
GSMUA_Achr9P02180_001	Banana	endoplasmic reticulum	42.24	45.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	40.46	44.29
GSMUA_Achr2P02600_001	Banana	cytosol	6.36	43.1
GSMUA_Achr5P25410_001	Banana	unclear	42.24	42.13
GSMUA_Achr2P02610_001	Banana	cytosol	7.89	40.26
GSMUA_Achr8P33500_001	Banana	plastid	43.26	39.63
GSMUA_Achr11P...	Banana	plasma membrane	40.46	39.55
GSMUA_Achr7P03580_001	Banana	plastid	43.0	39.39
GSMUA_Achr11P...	Banana	mitochondrion	36.9	34.69
GSMUA_Achr5P00230_001	Banana	plastid	13.49	24.09
GSMUA_Achr5P17220_001	Banana	extracellular	6.62	23.64
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	6.11	18.05

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	InterPro:DUF_CP12
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G22300_001	EnsemblPlants:GSMUA_Achr11P22300_001	EnsemblPlants:GSMUA_Achr11T22300_001	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M0RUG0	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02672	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0002958DE1
SEG:seg	:	:	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G22300_001]

Coordinates

chr11:-:22596225..22598090

Molecular Weight (calculated)

42139.8 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.015

Length

393 amino acids

Sequence
(BLAST)

001: MVFCFANREL LQTARAVPVR GETVAKLKVA INGFGRIGRN FLRCWHGRKD SPLEVLVVND SGGVKNASHL LKYDSMLGTF KADVKIVDNE TISVDGKPIK
101: VVSNRDPLKL PWAELGIDIV IEGTGVFVDG PGAGKHIQAG AKKVIITAPA KGADIPTYVV GVNEGDYHHE ASNIVSNASC TTNCLAPFVK VMDEEFGIVK
201: GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA AKAVSLVLPQ LKGKLNGIAL RVPTPNVSVV DLVVNVAKKG MTAEDVNNAF RKAAQGPLKG
301: ILAVCDVPLV SVDFRCSDVS STIDSSLTMV MGDDMVKVVA WYDNEWGYSQ RVVDLAHLVA SKWPGVPAQG SGDPLEDFCQ TNPETKECKV YEA

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.