Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 30.82 | 58.71 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 71.77 | 52.7 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 65.01 | 50.39 |
| Zm00001d004494_P001 | Maize | cytosol, mitochondrion | 21.67 | 49.1 |
| Os05t0210600-01 | Rice | cytosol | 36.98 | 46.38 |
| PGSC0003DMT400054803 | Potato | cytosol | 26.84 | 45.92 |
| PGSC0003DMT400054902 | Potato | cytosol | 26.64 | 44.82 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 63.42 | 44.8 |
| GSMUA_Achr10P... | Banana | cytosol | 59.05 | 44.53 |
| CDY34224 | Canola | cytosol | 5.96 | 43.48 |
| TraesCS3B01G162100.1 | Wheat | cytosol | 57.65 | 43.15 |
| TraesCS3D01G144600.1 | Wheat | cytosol | 57.46 | 42.81 |
| HORVU3Hr1G027650.2 | Barley | mitochondrion | 56.06 | 42.34 |
| TraesCS3A01G143000.1 | Wheat | cytosol | 56.46 | 42.26 |
| Os01t0218200-00 | Rice | plastid | 56.26 | 42.11 |
| Zm00001d008930_P003 | Maize | cytosol | 55.86 | 41.63 |
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 56.86 | 41.57 |
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 56.86 | 41.57 |
| EES01073 | Sorghum | cytosol | 56.26 | 41.56 |
| KRH21985 | Soybean | cytosol | 57.06 | 41.47 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 55.47 | 41.46 |
| KRH27330 | Soybean | cytosol | 57.46 | 41.4 |
| EES02247 | Sorghum | plastid | 56.26 | 41.37 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 56.46 | 41.28 |
| KRH26223 | Soybean | nucleus | 55.47 | 41.27 |
| KRH22291 | Soybean | plastid | 47.71 | 41.1 |
| Bra023795.1-P | Field mustard | cytosol | 7.16 | 40.91 |
| Zm00001d039362_P002 | Maize | cytosol | 54.47 | 40.9 |
| KRH55099 | Soybean | nucleus | 55.07 | 40.86 |
| HORVU3Hr1G054240.2 | Barley | cytosol, mitochondrion | 55.86 | 40.84 |
| Zm00001d044479_P001 | Maize | cytosol | 55.27 | 40.82 |
| TraesCS1B01G462300.1 | Wheat | cytosol | 56.26 | 40.78 |
| Solyc10g007420.2.1 | Tomato | cytosol | 34.39 | 40.71 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 55.67 | 40.4 |
| TraesCS1D01G437100.1 | Wheat | nucleus | 56.06 | 40.4 |
| Zm00001d011352_P001 | Maize | cytosol | 54.67 | 40.38 |
| TraesCS1A01G427400.1 | Wheat | cytosol | 55.67 | 40.17 |
| OQU78515 | Sorghum | cytosol | 55.86 | 40.14 |
| Bra038116.1-P | Field mustard | cytosol | 51.89 | 39.67 |
| CDY25865 | Canola | cytosol | 51.89 | 39.67 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 55.27 | 39.15 |
| Solyc07g062580.2.1 | Tomato | cytosol | 54.47 | 39.09 |
| PGSC0003DMT400032362 | Potato | cytosol | 54.27 | 39.0 |
| CDY45930 | Canola | cytosol | 51.09 | 39.0 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 51.09 | 38.36 |
| CDY02514 | Canola | cytosol, plastid | 51.09 | 38.36 |
| CDY25722 | Canola | cytosol, plastid | 50.5 | 38.08 |
| AT1G53300.1 | Thale cress | cytosol | 51.69 | 37.2 |
| PGSC0003DMT400054911 | Potato | cytosol | 38.37 | 37.04 |
| Bra007405.1-P | Field mustard | cytosol | 47.91 | 35.81 |
| CDX71941 | Canola | cytosol | 47.91 | 35.76 |
| Solyc10g007220.1.1 | Tomato | cytosol | 35.79 | 35.64 |
| CDY49237 | Canola | cytosol | 47.12 | 35.53 |
| CDY61202 | Canola | cytosol | 47.32 | 35.47 |
| Bra000267.1-P | Field mustard | cytosol | 47.32 | 35.42 |
| KRH27037 | Soybean | nucleus | 47.12 | 35.11 |
| Solyc10g007250.1.1 | Tomato | cytosol | 19.28 | 34.77 |
| AT3G58620.1 | Thale cress | cytosol | 47.12 | 34.75 |
| CDY42827 | Canola | cytosol | 46.32 | 34.72 |
| AT2G42580.1 | Thale cress | cytosol | 46.92 | 34.15 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 25.65 | 34.13 |
| Solyc10g007240.1.1 | Tomato | cytosol | 39.96 | 33.84 |
| CDY55390 | Canola | cytosol | 44.93 | 33.78 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 41.15 | 33.66 |
| Solyc10g007230.1.1 | Tomato | cytosol | 39.36 | 33.22 |
| CDY51514 | Canola | cytosol | 44.14 | 33.18 |
| PGSC0003DMT400054904 | Potato | cytosol | 39.56 | 32.95 |
| Bra004709.1-P | Field mustard | cytosol | 42.54 | 32.57 |
| PGSC0003DMT400054909 | Potato | cytosol | 25.84 | 31.55 |
| Os05t0587300-01 | Rice | cytosol | 34.79 | 31.53 |
| AT3G14950.1 | Thale cress | cytosol | 45.13 | 31.1 |
| CDY32327 | Canola | cytosol | 44.53 | 30.73 |
| CDY20095 | Canola | nucleus | 43.94 | 30.36 |
| PGSC0003DMT400091014 | Potato | nucleus | 36.18 | 29.98 |
| Bra021583.1-P | Field mustard | nucleus | 44.73 | 29.76 |
| Bra027292.1-P | Field mustard | cytosol | 43.34 | 29.7 |
| CDX98517 | Canola | cytosol | 42.35 | 29.42 |
| CDX97619 | Canola | cytosol | 42.15 | 29.24 |
| CDY40820 | Canola | mitochondrion | 15.9 | 28.47 |
| GSMUA_Achr3P24690_001 | Banana | cytosol | 36.38 | 26.95 |
| CDY34222 | Canola | cytosol | 16.5 | 26.95 |
| Zm00001d009724_P009 | Maize | cytosol | 53.68 | 25.26 |
| GSMUA_Achr11P... | Banana | plastid | 28.63 | 24.62 |
| CDY34223 | Canola | cytosol | 15.11 | 23.31 |
| Bra023793.1-P | Field mustard | cytosol | 18.89 | 23.06 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 14.71 | 22.7 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 9.94 | 21.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 3.78 | 7.09 |
| Zm00001d006366_P001 | Maize | cytosol | 0.6 | 1.29 |
| Zm00001d033961_P001 | Maize | cytosol | 0.6 | 1.29 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:3.40.30.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG11160_001 | EnsemblPlants:GSMUA_AchrUn_randomP11160_001 | EnsemblPlants:GSMUA_AchrUn_randomT11160_001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR013766 |
| InterPro:IPR019734 | UniProt:M0U875 | PFAM:PF00085 | PFAM:PF13414 | PFscan:PS50293 | PANTHER:PTHR22904 |
| PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF52833 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI000295CD37 | SEG:seg | : |
Description
TPR repeat-containing thioredoxin TTL1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11160_001]
Coordinates
chrchrUn_random:-:54065673..54068695
Molecular Weight (calculated)
55919.3 Da
IEP (calculated)
8.720
GRAVY (calculated)
-0.130
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLCCRLLG FTADAISTLM GKQMASGHQL FYAIHGNILR ILDPKCSNQF TDSAWLFYDS VRITVAALLG LVEDARKHHF LAGQPPDPVE LQKLQSVERH
101: WLKCGDARKV GDWKSVLREA DAAIAAGADS SPLLVASRAE ALFHLHQLDE ADSILTRSLK FEDSFSFFSA AKIFGMLSHS YFYIVKAQVD MALGRFENAV
201: MAAEKAKQMD GRNIGVTTVL NNIRSVARAR AQGNELFKSG NFAEACTAYG EGLKYDPSNP VLLCNRAACR SKLGQWVKSV EDCNEALRIQ PNYTKALLRR
301: ADSYAKLERW SESVRDYEVL RKELPGDNEV AEALFHAQIA LKTSRGEEIS NLKFGGEVEE VTSAEQFRAA VSLPGASVVY FMTSSNLQCI QITPFVDALC
401: TRYPSANFLK VDVKRSPGIA VAENVRVVPT FKIYKNGKRV KEMICPSQQV LENSVRHYIK RKRAHFSPFT CTFLVPRPPH VFFPFICGAP VSSIKCPEQP
501: LSS
101: WLKCGDARKV GDWKSVLREA DAAIAAGADS SPLLVASRAE ALFHLHQLDE ADSILTRSLK FEDSFSFFSA AKIFGMLSHS YFYIVKAQVD MALGRFENAV
201: MAAEKAKQMD GRNIGVTTVL NNIRSVARAR AQGNELFKSG NFAEACTAYG EGLKYDPSNP VLLCNRAACR SKLGQWVKSV EDCNEALRIQ PNYTKALLRR
301: ADSYAKLERW SESVRDYEVL RKELPGDNEV AEALFHAQIA LKTSRGEEIS NLKFGGEVEE VTSAEQFRAA VSLPGASVVY FMTSSNLQCI QITPFVDALC
401: TRYPSANFLK VDVKRSPGIA VAENVRVVPT FKIYKNGKRV KEMICPSQQV LENSVRHYIK RKRAHFSPFT CTFLVPRPPH VFFPFICGAP VSSIKCPEQP
501: LSS
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.