Factsheet for GSMUA_Achr10P00960_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13680_001
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	GSMUA_Achr10P...	AT4G14440.1	21798944
AT4G14430.1	GSMUA_Achr1P13680_001	AT4G14440.1	21798944
AT4G14440.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT4G14440.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT4G14440.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT4G14440.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT4G14440.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT4G14440.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	60.08	58.87
TraesCS3D01G137500.1	Wheat	cytosol	52.67	53.78
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	53.91	53.69
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	53.09	53.53
TraesCS3B01G154300.1	Wheat	mitochondrion	51.85	53.39
Zm00001d038755_P001	Maize	extracellular, mitochondrion	53.09	53.31
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	53.09	53.31
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	53.5	53.28
TraesCS3B01G154500.1	Wheat	cytosol	51.85	52.72
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	51.85	52.72
HORVU1Hr1G081470.3	Barley	peroxisome	52.67	52.46
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	52.26	52.26
TraesCS1D01G352000.1	Wheat	peroxisome	52.26	52.05
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	50.21	51.26
AT1G65520.1	Thale cress	peroxisome	50.62	51.25
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	50.62	51.25
EES18539	Sorghum	mitochondrion, peroxisome, plastid	51.03	51.24
CDY67294	Canola	peroxisome	50.21	51.05
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	49.79	50.84
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	50.62	50.83
TraesCS1D01G352100.1	Wheat	peroxisome	49.38	50.21
CDY16410	Canola	mitochondrion	49.38	50.21
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	51.03	50.2
EES02280	Sorghum	cytosol	49.38	49.79
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	49.38	49.79
KRH21512	Soybean	cytosol, peroxisome, plastid	49.38	49.79
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	48.97	49.79
EES02279	Sorghum	mitochondrion, plastid	50.62	49.4
Bra022473.1-P	Field mustard	cytosol	48.56	49.37
KRH01629	Soybean	cytosol, peroxisome, plastid	48.15	49.16
TraesCS3D01G137300.1	Wheat	plastid	52.26	49.03
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	48.15	48.75
PGSC0003DMT400050550	Potato	peroxisome	45.68	48.47
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	47.74	48.33
AT4G14430.1	Thale cress	peroxisome	47.74	48.33
CDY12468	Canola	cytosol, mitochondrion, plastid	47.74	48.33
CDY47152	Canola	cytosol, mitochondrion, plastid	47.74	48.33
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	51.44	47.53
PGSC0003DMT400041985	Potato	extracellular	46.5	47.28
AT4G14440.1	Thale cress	cytosol	45.68	46.64
Solyc06g053670.1.1	Tomato	plastid	45.68	46.44
KRG89978	Soybean	cytosol	25.93	46.32
Bra033483.1-P	Field mustard	peroxisome	45.27	46.22
CDY23155	Canola	peroxisome	44.86	45.8
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	46.09	45.16
CDY12773	Canola	peroxisome	44.03	44.96
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	45.27	44.35
KRH31723	Soybean	peroxisome, plasma membrane, plastid	44.86	43.78
CDY19969	Canola	cytosol, nucleus, peroxisome	49.79	42.91
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	49.79	42.91
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	16.46	40.0
Zm00001d039741_P001	Maize	plastid	26.34	39.75
HORVU1Hr1G082330.11	Barley	plastid	18.11	36.07
Solyc05g010720.2.1	Tomato	peroxisome	45.27	24.5

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00960_001	EnsemblPlants:GSMUA_Achr10T00960_001	EnsemblPlantsGene:GSMUA_Achr10G00960_001	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84
PFAM:PF00378	SEG:seg	SUPFAM:SSF52096	UniParc:UPI000295CB17	UniProt:M0REC3	MapMan:5.7.3.5.1

Description

enoyl-CoA hydratase/isomerase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G00960_001]

Coordinates

chr10:-:1623230..1624195

Molecular Weight (calculated)

25857.4 Da

IEP (calculated)

6.788

GRAVY (calculated)

0.163

Length

243 amino acids

Sequence
(BLAST)

001: MCSVEKRGRV YLLTLAGTDE HRLNPALLDA IRSALAGVRS DAAASGGSAA LVVAAEGKFF SNGFDLAWAR VSPSDRVPLM VPALQRTIAD LLSLPMPTIA
101: AVTGHAAAAG CFLVLSHDYV VMRADRGFLY MSEIDIGLPI TENIMAVMRA KIADPRTRRD LLLRGKRMTA AEAAARGIVD RAVEGAAETV EAAVAMGEEL
201: AARNWDGEVY ASIRKGVFRE ACRGIGVAVE EEEAEMKKAA SKL

Best Arabidopsis Sequence Match ( AT1G65520.1 )
(BLAST)

001: MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL

Arabidopsis Description

ECI1Enoyl-CoA delta isomerase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O04469]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.