Factsheet for Solyc06g053670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g053670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	Solyc06g053670.1.1	AT4G14440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041985	Potato	extracellular	92.89	92.89
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	38.08	91.0
CDY47152	Canola	cytosol, mitochondrion, plastid	62.34	62.08
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	61.92	61.67
CDY12468	Canola	cytosol, mitochondrion, plastid	61.92	61.67
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	60.67	60.92
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	59.41	59.66
KRH21512	Soybean	cytosol, peroxisome, plastid	59.83	59.34
AT4G14430.1	Thale cress	peroxisome	59.41	59.17
AT4G14440.1	Thale cress	cytosol	56.07	56.3
CDY23155	Canola	peroxisome	55.65	55.88
CDY12773	Canola	peroxisome	55.65	55.88
Bra033483.1-P	Field mustard	peroxisome	55.65	55.88
KRH31723	Soybean	peroxisome, plasma membrane, plastid	55.65	53.41
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	51.88	50.0
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	49.37	47.58
HORVU1Hr1G081470.3	Barley	peroxisome	48.54	47.54
TraesCS1D01G352100.1	Wheat	peroxisome	47.28	47.28
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	47.7	46.72
TraesCS1D01G352000.1	Wheat	peroxisome	47.28	46.31
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	47.28	46.31
Zm00001d038755_P001	Maize	extracellular, mitochondrion	46.86	46.28
EES18539	Sorghum	mitochondrion, peroxisome, plastid	46.44	45.87
GSMUA_Achr10P...	Banana	peroxisome	46.44	45.68
TraesCS3B01G154300.1	Wheat	mitochondrion	44.35	44.92
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	45.19	44.63
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	44.35	43.98
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	43.93	43.75
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	43.93	43.21
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	44.35	42.91
EES02280	Sorghum	cytosol	43.1	42.74
EES02279	Sorghum	mitochondrion, plastid	43.93	42.17
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	42.68	42.15
TraesCS3D01G137500.1	Wheat	cytosol	41.42	41.6
TraesCS3D01G137300.1	Wheat	plastid	44.77	41.31
TraesCS3B01G154500.1	Wheat	cytosol	41.0	41.0
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	40.17	40.17
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	40.59	36.88
Zm00001d039741_P001	Maize	plastid	20.5	30.43
HORVU1Hr1G082330.11	Barley	plastid	15.06	29.51
Solyc05g010720.2.1	Tomato	peroxisome	44.35	23.61

Protein Annotations

EnsemblPlants:Solyc06g053670.1.1	EnsemblPlantsGene:Solyc06g053670.1	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004165
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84	PFAM:PF00378
SEG:seg	SUPFAM:SSF52096	UniParc:UPI0002765756	UniProt:K4C654	MapMan:5.7.3.5.1	:

Description

No Description!

Coordinates

chr6:-:36510255..36510974

Molecular Weight (calculated)

25840.6 Da

IEP (calculated)

8.656

GRAVY (calculated)

0.060

Length

239 amino acids

Sequence
(BLAST)

001: MCTLEKAGNI FYLTLTGNDE HRLNPTLIAT LRSTLAQVKS QSVKGSVLIT KADGRFFSNG FDLKYAQAGG SAKASIDRLR SMVDSLKPVV ADFMSLPIPT
101: IAAVTGHAAA AGLLLAMSHD YIMMRSDKGV LYMSELDIGM TLPDYFTAMI RSKIGSAVAR RDLVLKTSKI RGEDAVRMGM VDSAHGTAEE TVDAAVQLAE
201: ELGKKRWDGK AYAEIRKSLF PELCGILGLK DVEVLPSHL

Best Arabidopsis Sequence Match ( AT4G14430.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGDGE HRFHPDTIAT ILSLLEQAKS QSTRGSILIT TANGKFFSNG FDLAWAQTAG SKTGAANRLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGLILALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI VDSAAYDSEE GVVVASVRLG
201: EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL

Arabidopsis Description

ECI2PEC12 [Source:UniProtKB/TrEMBL;Acc:A0A178UV55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.