Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14440.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT4G14440.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT4G14440.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT4G14440.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23155 | Canola | peroxisome | 97.48 | 97.48 |
| AT4G14440.1 | Thale cress | cytosol | 84.03 | 84.03 |
| CDY12468 | Canola | cytosol, mitochondrion, plastid | 80.25 | 79.58 |
| CDY47152 | Canola | cytosol, mitochondrion, plastid | 80.25 | 79.58 |
| VIT_05s0049g00180.t01 | Wine grape | mitochondrion, peroxisome, plastid | 58.4 | 58.4 |
| VIT_05s0049g00160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 58.4 | 58.4 |
| KRH21512 | Soybean | cytosol, peroxisome, plastid | 58.82 | 58.09 |
| PGSC0003DMT400041985 | Potato | extracellular | 57.14 | 56.9 |
| Solyc06g053670.1.1 | Tomato | plastid | 55.88 | 55.65 |
| KRH31723 | Soybean | peroxisome, plasma membrane, plastid | 56.3 | 53.82 |
| PGSC0003DMT400041986 | Potato | cytosol, mitochondrion, peroxisome, plastid | 20.59 | 49.0 |
| GSMUA_Achr1P13680_001 | Banana | cytosol, peroxisome, plastid | 48.32 | 46.37 |
| TraesCS3B01G154300.1 | Wheat | mitochondrion | 44.54 | 44.92 |
| TraesCS3A01G136600.1 | Wheat | cytosol, peroxisome, plastid | 45.38 | 44.81 |
| HORVU3Hr1G026030.1 | Barley | mitochondrion, peroxisome | 45.38 | 44.44 |
| CDY67294 | Canola | peroxisome | 44.54 | 44.35 |
| GSMUA_Achr10P... | Banana | peroxisome | 44.96 | 44.03 |
| HORVU3Hr1G026050.3 | Barley | cytosol, mitochondrion, peroxisome | 43.7 | 43.51 |
| EES18539 | Sorghum | mitochondrion, peroxisome, plastid | 43.7 | 42.98 |
| Zm00001d038755_P001 | Maize | extracellular, mitochondrion | 43.7 | 42.98 |
| TraesCS3D01G137500.1 | Wheat | cytosol | 42.86 | 42.86 |
| CDY16410 | Canola | mitochondrion | 42.44 | 42.26 |
| TraesCS3B01G154500.1 | Wheat | cytosol | 42.44 | 42.26 |
| HORVU1Hr1G081470.3 | Barley | peroxisome | 43.28 | 42.21 |
| Zm00001d039408_P001 | Maize | cytosol, mitochondrion, peroxisome | 42.02 | 41.67 |
| CDY60945 | Canola | cytosol, mitochondrion, peroxisome, plastid | 41.6 | 41.42 |
| TraesCS1D01G352100.1 | Wheat | peroxisome | 41.6 | 41.42 |
| TraesCS1B01G363700.1 | Wheat | mitochondrion, peroxisome | 42.44 | 41.39 |
| TraesCS3D01G137300.1 | Wheat | plastid | 44.96 | 41.31 |
| Os05t0529200-01 | Rice | cytosol, peroxisome, plastid | 41.6 | 40.91 |
| TraesCS1A01G349200.1 | Wheat | mitochondrion, peroxisome | 41.6 | 40.57 |
| Zm00001d008892_P001 | Maize | cytosol, mitochondrion, peroxisome | 40.76 | 40.08 |
| TraesCS3A01G136700.1 | Wheat | cytosol, mitochondrion, peroxisome | 44.12 | 39.92 |
| EES02280 | Sorghum | cytosol | 40.34 | 39.83 |
| TraesCS1D01G352000.1 | Wheat | peroxisome | 40.34 | 39.34 |
| Os01t0205600-01 | Rice | cytosol, peroxisome, plastid | 40.34 | 38.87 |
| EES02279 | Sorghum | mitochondrion, plastid | 40.34 | 38.55 |
| CDY19969 | Canola | cytosol, nucleus, peroxisome | 43.7 | 36.88 |
| Zm00001d039741_P001 | Maize | plastid | 21.85 | 32.3 |
| HORVU1Hr1G082330.11 | Barley | plastid | 13.45 | 26.23 |
Protein Annotations
| EnsemblPlants:CDY12773 | EnsemblPlantsGene:GSBRNA2T00070367001 | Gene3D:3.90.226.10 | GO:A0A078FKS1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:ClpP/crotonase-like_dom_sf | InterPro:Enoyl-CoA_hydra/iso | PANTHER:PTHR11941 | PANTHER:PTHR11941:SF84 |
| PFAM:PF00378 | ProteinID:CDY12773 | ProteinID:CDY12773.1 | SEG:seg | SUPFAM:SSF52096 | UniParc:UPI0004EC996C |
| UniProt:A0A078FKS1 | MapMan:5.7.3.5.1 | : | : | : | : |
Description
BnaC04g28680DBnaC04g28680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKS1]
Coordinates
chrLK032026:+:809238..810144
Molecular Weight (calculated)
25394.7 Da
IEP (calculated)
6.886
GRAVY (calculated)
0.181
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTLEKRGDL FLLTLTGDDE HRFHPDTISS VLSLLEQAKS QSTRGSVLIT TAHGKFFSNG FDLAWAQAAG SQTGAVNRMH QMVESFKPVI GALFDLPMPT
101: IAALNGHAAA SGLMFALSHD YVFMRNDRGV LYMSEVDLGL PLPDYFAAMF AAKIGTSIAR RELLLSGKKI KGEEAVALGI VDSAAHDSVE GVVDATVSLG
201: QSLAAKKWNG EVYASIRKSL YPGLCAMLSL TAKIAASP
101: IAALNGHAAA SGLMFALSHD YVFMRNDRGV LYMSEVDLGL PLPDYFAAMF AAKIGTSIAR RELLLSGKKI KGEEAVALGI VDSAAHDSVE GVVDATVSLG
201: QSLAAKKWNG EVYASIRKSL YPGLCAMLSL TAKIAASP
001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
Arabidopsis Description
ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.