Factsheet for Zm00001d038755_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008892_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d038755_P001
Zm00001d039362_P002
Zm00001d039408_P001
Zm00001d039741_P001
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	Zm00001d008892_P001	AT4G14440.1	21798944
AT4G14430.1	Zm00001d038755_P001	AT4G14440.1	21798944
AT4G14430.1	Zm00001d039408_P001	AT4G14440.1	21798944
AT4G14430.1	Zm00001d039741_P001	AT4G14440.1	21798944
AT4G14440.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT4G14440.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT4G14440.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT4G14440.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT4G14440.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT4G14440.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT4G14440.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT4G14440.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18539	Sorghum	mitochondrion, peroxisome, plastid	85.95	85.95
HORVU1Hr1G081470.3	Barley	peroxisome	82.23	81.56
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	79.75	79.75
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	79.34	78.69
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	78.93	78.28
TraesCS1D01G352000.1	Wheat	peroxisome	78.93	78.28
TraesCS1D01G352100.1	Wheat	peroxisome	69.42	70.29
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	56.2	54.84
GSMUA_Achr10P...	Banana	peroxisome	53.31	53.09
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	50.41	51.26
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	49.59	50.42
KRH21512	Soybean	cytosol, peroxisome, plastid	49.59	49.79
PGSC0003DMT400041985	Potato	extracellular	47.52	48.12
CDY12468	Canola	cytosol, mitochondrion, plastid	47.52	47.92
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	47.52	47.92
CDY47152	Canola	cytosol, mitochondrion, plastid	47.52	47.92
KRH31723	Soybean	peroxisome, plasma membrane, plastid	49.17	47.79
Solyc06g053670.1.1	Tomato	plastid	46.28	46.86
AT1G65520.1	Thale cress	peroxisome	46.28	46.67
AT4G14430.1	Thale cress	peroxisome	46.28	46.67
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	45.87	46.25
AT4G14440.1	Thale cress	cytosol	45.04	45.8
CDY16410	Canola	mitochondrion	45.04	45.61
KRH01629	Soybean	cytosol, peroxisome, plastid	44.63	45.38
CDY67294	Canola	peroxisome	44.63	45.19
HORVU1Hr1G082330.11	Barley	plastid	22.73	45.08
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	45.04	45.04
PGSC0003DMT400050550	Potato	peroxisome	42.56	44.98
Bra022473.1-P	Field mustard	cytosol	44.21	44.77
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	44.21	44.77
KRG89978	Soybean	cytosol	24.79	44.12
CDY23155	Canola	peroxisome	43.39	44.12
Bra033483.1-P	Field mustard	peroxisome	43.39	44.12
CDY12773	Canola	peroxisome	42.98	43.7
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	17.77	43.0
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	42.15	42.32
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	41.74	42.08
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	42.56	41.53
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	41.32	40.32
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	45.45	39.01
CDY19969	Canola	cytosol, nucleus, peroxisome	44.63	38.3
Zm00001d039741_P001	Maize	plastid	24.38	36.65
Solyc05g010720.2.1	Tomato	peroxisome	40.08	21.6

Protein Annotations

EMBL:EU966819	EnsemblPlants:Zm00001d038755_P001	EnsemblPlants:Zm00001d038755_T001	EnsemblPlantsGene:Zm00001d038755	EntrezGene:100284027	Gene3D:3.90.226.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso
PANTHER:PTHR11941	PANTHER:PTHR11941:SF106	PFAM:PF00378	ProteinID:AQK87737.1	SEG:seg	SUPFAM:SSF52096
UniParc:UPI000182DE22	UniProt:B6TPA4	MapMan:5.7.3.5.1	:	:	:

Description

Carnitine racemase/ catalytic

Coordinates

chr6:+:163931390..163932118

Molecular Weight (calculated)

25659.2 Da

IEP (calculated)

8.618

GRAVY (calculated)

0.146

Length

242 amino acids

Sequence
(BLAST)

001: MCTLEQRGRV FVLTLTGDGE HRLGHALISS LRSAVASAAA GAAKAGPGAA LVTVGEGRFF SNGLDIGWAG TSRARLGELV DALRPLVADL LALPMPTVAA
101: VTGHASAGGC LLALCHDYRI MRGDRGVLYM SEVDIGLPLP PYFMAVLRAK ITAANALRDV VLRGKKVRAA EGKDMGIVDA VYPSALETAD QAFKFAEQLA
201: ARKWDGGVYA SIRMSMYPEA CRSVGIVEES DEEKRKHFAS KL

Best Arabidopsis Sequence Match ( AT4G14440.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL

Arabidopsis Description

ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.