Factsheet for PGSC0003DMT400033247

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 2
peroxisome 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	91.13	91.13
PGSC0003DMT400050550	Potato	peroxisome	54.44	58.95
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	56.05	57.68
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	55.65	57.5
CDY67294	Canola	peroxisome	54.44	56.49
KRH01629	Soybean	cytosol, peroxisome, plastid	54.03	56.3
KRG89978	Soybean	cytosol	30.65	55.88
CDY16410	Canola	mitochondrion	53.23	55.23
AT1G65520.1	Thale cress	peroxisome	52.82	54.58
Bra022473.1-P	Field mustard	cytosol	52.42	54.39
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	52.42	54.39
PGSC0003DMT400041985	Potato	extracellular	48.79	50.63
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	55.24	48.58
CDY19969	Canola	cytosol, nucleus, peroxisome	54.03	47.52
GSMUA_Achr10P...	Banana	peroxisome	45.16	46.09
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	43.15	43.15
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	17.34	43.0
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	41.94	42.62
TraesCS3B01G154500.1	Wheat	cytosol	40.73	42.26
TraesCS1D01G352000.1	Wheat	peroxisome	41.53	42.21
TraesCS3D01G137500.1	Wheat	cytosol	40.32	42.02
TraesCS3B01G154300.1	Wheat	mitochondrion	39.92	41.95
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	40.32	41.84
HORVU1Hr1G081470.3	Barley	peroxisome	41.13	41.8
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	41.13	41.8
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	40.73	41.56
EES18539	Sorghum	mitochondrion, peroxisome, plastid	40.32	41.32
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	40.32	41.32
Zm00001d038755_P001	Maize	extracellular, mitochondrion	40.32	41.32
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	39.92	41.08
EES02279	Sorghum	mitochondrion, plastid	41.13	40.96
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	39.92	40.91
TraesCS1D01G352100.1	Wheat	peroxisome	38.31	39.75
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	38.71	38.87
EES02280	Sorghum	cytosol	37.5	38.59
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	37.1	38.33
TraesCS3D01G137300.1	Wheat	plastid	39.92	38.22
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	40.32	38.02
Zm00001d039741_P001	Maize	plastid	21.77	33.54
HORVU1Hr1G082330.11	Barley	plastid	14.11	28.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400033247	EnsemblPlantsGene:PGSC0003DMG400012768	EntrezGene:102584122	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84
PFAM:PF00378	PGSC:PGSC0003DMG400012768	RefSeq:XP_006339447.1	SEG:seg	SUPFAM:SSF52096	UniParc:UPI000294E25D
UniProt:M1AYU2	MapMan:5.7.3.5.1	:	:	:	:

Description

Carnitine racemase [Source:PGSC_GENE;Acc:PGSC0003DMG400012768]

Coordinates

chr1:+:70921191..70922159

Molecular Weight (calculated)

27315.1 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.059

Length

248 amino acids

Sequence
(BLAST)

001: MESKELCTLE KRGNIFLLTL TGNDDHRLHP NLIDSISAAL RRVRSESTSS SSALITTAQG KYFSNGYDLK WALVDKARQK LMSRKLRSLV SDLITLPMPT
101: IAAVTGHASA AGFVFALCHD YILMRKDRGF LYMSELDIGF PIPIWFSALV KCRMGLPAVR REVVMKAAKV TAEMGVQMGF VDSAHSGAEE TVEAAIKLGE
201: ELVSRNWDGK TYAGCRKTLF LELLNSLGSD ETVGDYGDEE ANKTLAKL

Best Arabidopsis Sequence Match ( AT1G65520.1 )
(BLAST)

001: MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL

Arabidopsis Description

ECI1Enoyl-CoA delta isomerase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O04469]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.