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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:
  • peroxisome 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:mitochondrion, peroxisome
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008892_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d038755_P001
Zm00001d039362_P002
Zm00001d039408_P001
Zm00001d039741_P001
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G14430.1 Zm00001d008892_P001 AT4G14440.1 21798944
AT4G14430.1 Zm00001d038755_P001 AT4G14440.1 21798944
AT4G14430.1 Zm00001d039408_P001 AT4G14440.1 21798944
AT4G14430.1 Zm00001d039741_P001 AT4G14440.1 21798944
AT4G14440.1 Zm00001d004494_P001 AT2G42580.1 19000166
AT4G14440.1 Zm00001d006366_P001 AT2G42580.1 19000166
AT4G14440.1 Zm00001d008930_P003 AT2G42580.1 19000166
AT4G14440.1 Zm00001d009724_P009 AT2G42580.1 19000166
AT4G14440.1 Zm00001d011352_P001 AT2G42580.1 19000166
AT4G14440.1 Zm00001d033961_P001 AT2G42580.1 19000166
AT4G14440.1 Zm00001d039362_P002 AT2G42580.1 19000166
AT4G14440.1 Zm00001d044479_P001 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES02279 Sorghum mitochondrion, plastid 85.95 83.53
Zm00001d039408_P001 Maize cytosol, mitochondrion, peroxisome 68.18 68.75
Zm00001d039741_P001 Maize plastid 34.71 52.17
GSMUA_Achr10P... Banana peroxisome 50.83 50.62
Zm00001d038755_P001 Maize extracellular, mitochondrion 45.04 45.04
AT4G14430.1 Thale cress peroxisome 44.21 44.58
VIT_05s0049g00180.t01 Wine grape mitochondrion, peroxisome, plastid 43.39 44.12
GSMUA_Achr1P13680_001 Banana cytosol, peroxisome, plastid 45.04 43.95
Bra039860.1-P Field mustard cytosol, mitochondrion, plastid 43.39 43.75
CDY12468 Canola cytosol, mitochondrion, plastid 42.98 43.33
CDY47152 Canola cytosol, mitochondrion, plastid 42.98 43.33
AT4G14440.1 Thale cress cytosol 42.56 43.28
Solyc06g053670.1.1 Tomato plastid 42.15 42.68
PGSC0003DMT400041985 Potato extracellular 42.15 42.68
VIT_13s0019g00690.t01 Wine grape cytosol, peroxisome, plastid 42.15 42.5
KRH01629 Soybean cytosol, peroxisome, plastid 41.74 42.44
VIT_13s0019g00710.t01 Wine grape cytosol, peroxisome, plastid 42.15 42.32
VIT_05s0049g00160.t01 Wine grape mitochondrion, peroxisome, plastid 41.32 42.02
PGSC0003DMT400050550 Potato peroxisome 39.26 41.48
CDY16410 Canola mitochondrion 40.91 41.42
AT1G65520.1 Thale cress peroxisome 40.91 41.25
KRG89978 Soybean cytosol 23.14 41.18
Bra033483.1-P Field mustard peroxisome 40.5 41.18
CDY23155 Canola peroxisome 40.5 41.18
CDY12773 Canola peroxisome 40.08 40.76
Solyc01g091520.2.1 Tomato cytosol, mitochondrion, peroxisome 41.32 40.32
CDY67294 Canola peroxisome 39.67 40.17
CDY60945 Canola cytosol, mitochondrion, peroxisome, plastid 39.67 40.17
Bra022473.1-P Field mustard cytosol 39.67 40.17
PGSC0003DMT400033247 Potato cytosol, mitochondrion, peroxisome 40.91 39.92
KRH31723 Soybean peroxisome, plasma membrane, plastid 40.91 39.76
KRH21512 Soybean cytosol, peroxisome, plastid 39.26 39.42
PGSC0003DMT400041986 Potato cytosol, mitochondrion, peroxisome, plastid 15.29 37.0
Bra036189.1-P Field mustard cytosol, nucleus, peroxisome 40.5 34.75
CDY19969 Canola cytosol, nucleus, peroxisome 40.08 34.4
Solyc05g010720.2.1 Tomato peroxisome 35.95 19.38
Protein Annotations
EnsemblPlants:Zm00001d008892_P001EnsemblPlants:Zm00001d008892_T001EnsemblPlantsGene:Zm00001d008892Gene3D:3.90.226.10GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152InterPro:ClpP/crotonase-like_dom_sfInterPro:Enoyl-CoA_hydra/isoPANTHER:PTHR11941PANTHER:PTHR11941:SF84
PFAM:PF00378ProteinID:AQK90970.1SEG:segSUPFAM:SSF52096UniParc:UPI0004DE8AECUniProt:A0A1D6FGJ6
MapMan:5.7.3.5.1:::::
Description
Carnitine racemase like protein
Coordinates
chr8:+:24167040..24167768
Molecular Weight (calculated)
25310.6 Da
IEP (calculated)
8.246
GRAVY (calculated)
0.164
Length
242 amino acids
Sequence
(BLAST)
001: MEESLCAVEK RGRVHVITLT GAEEHRLSPA LLSALRSAVA AARRASPGAL VLAGEGKFFS NGYDLAWARA GPAPAPGHRL SEMRAAFRGL VADLLALPVP
101: TVAAVTGHAA GAGCALALAH DAVAMRASRG FLYMSEVDAG IKIVDFVGEL VRQKVPDAAA RRDLVMKGEK MTAAQAARRG IVDAAVDGGV EDVVAAAVAM
201: AEELAARDWD GENLAAIRKD AWPVLWSKVK DYGGDVLARP RL
Best Arabidopsis Sequence Match ( AT4G14440.1 )
(BLAST)
001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
Arabidopsis Description
ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.