Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14440.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT4G14440.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23155 | Canola | peroxisome | 98.32 | 98.32 |
| AT4G14440.1 | Thale cress | cytosol | 84.03 | 84.03 |
| Bra039860.1-P | Field mustard | cytosol, mitochondrion, plastid | 80.25 | 79.58 |
| KRH21512 | Soybean | cytosol, peroxisome, plastid | 59.66 | 58.92 |
| VIT_05s0049g00180.t01 | Wine grape | mitochondrion, peroxisome, plastid | 58.82 | 58.82 |
| VIT_05s0049g00160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 58.82 | 58.82 |
| PGSC0003DMT400041985 | Potato | extracellular | 57.14 | 56.9 |
| Solyc06g053670.1.1 | Tomato | plastid | 55.88 | 55.65 |
| KRH31723 | Soybean | peroxisome, plasma membrane, plastid | 57.14 | 54.62 |
| PGSC0003DMT400041986 | Potato | cytosol, mitochondrion, peroxisome, plastid | 20.17 | 48.0 |
| GSMUA_Achr1P13680_001 | Banana | cytosol, peroxisome, plastid | 48.74 | 46.77 |
| TraesCS3B01G154300.1 | Wheat | mitochondrion | 44.96 | 45.34 |
| GSMUA_Achr10P... | Banana | peroxisome | 46.22 | 45.27 |
| TraesCS3A01G136600.1 | Wheat | cytosol, peroxisome, plastid | 45.8 | 45.23 |
| HORVU3Hr1G026030.1 | Barley | mitochondrion, peroxisome | 44.96 | 44.03 |
| EES18539 | Sorghum | mitochondrion, peroxisome, plastid | 44.54 | 43.8 |
| HORVU3Hr1G026050.3 | Barley | cytosol, mitochondrion, peroxisome | 43.7 | 43.51 |
| Zm00001d038755_P001 | Maize | extracellular, mitochondrion | 44.12 | 43.39 |
| TraesCS3D01G137500.1 | Wheat | cytosol | 43.28 | 43.28 |
| HORVU1Hr1G081470.3 | Barley | peroxisome | 44.12 | 43.03 |
| TraesCS3B01G154500.1 | Wheat | cytosol | 42.86 | 42.68 |
| Bra022473.1-P | Field mustard | cytosol | 42.44 | 42.26 |
| TraesCS1D01G352100.1 | Wheat | peroxisome | 42.44 | 42.26 |
| TraesCS1B01G363700.1 | Wheat | mitochondrion, peroxisome | 43.28 | 42.21 |
| Zm00001d039408_P001 | Maize | cytosol, mitochondrion, peroxisome | 42.44 | 42.08 |
| Os05t0529200-01 | Rice | cytosol, peroxisome, plastid | 42.44 | 41.74 |
| TraesCS3D01G137300.1 | Wheat | plastid | 45.38 | 41.7 |
| TraesCS1A01G349200.1 | Wheat | mitochondrion, peroxisome | 42.44 | 41.39 |
| Zm00001d008892_P001 | Maize | cytosol, mitochondrion, peroxisome | 41.18 | 40.5 |
| TraesCS3A01G136700.1 | Wheat | cytosol, mitochondrion, peroxisome | 44.54 | 40.3 |
| EES02280 | Sorghum | cytosol | 40.76 | 40.25 |
| TraesCS1D01G352000.1 | Wheat | peroxisome | 41.18 | 40.16 |
| Os01t0205600-01 | Rice | cytosol, peroxisome, plastid | 40.76 | 39.27 |
| EES02279 | Sorghum | mitochondrion, plastid | 40.34 | 38.55 |
| Bra036189.1-P | Field mustard | cytosol, nucleus, peroxisome | 44.96 | 37.94 |
| Zm00001d039741_P001 | Maize | plastid | 22.27 | 32.92 |
| HORVU1Hr1G082330.11 | Barley | plastid | 13.87 | 27.05 |
Protein Annotations
| Gene3D:3.90.226.10 | MapMan:5.7.3.5.1 | EnsemblPlantsGene:Bra033483 | EnsemblPlants:Bra033483.1 | EnsemblPlants:Bra033483.1-P | InterPro:ClpP/crotonase-like_dom_sf |
| InterPro:Enoyl-CoA_hydra/iso | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004165 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009062 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0080167 |
| UniProt:M4EXE6 | PFAM:PF00378 | PANTHER:PTHR11941 | PANTHER:PTHR11941:SF84 | SUPFAM:SSF52096 | UniParc:UPI0002543A2D |
| SEG:seg | : | : | : | : | : |
Description
AT4G14440 (E=3e-104) ATECI3, ECI3, HCD1 | HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1); carnitine racemase/ catalytic/ dodecenoyl-CoA delta-isomerase
Coordinates
chrA04:-:4537673..4538389
Molecular Weight (calculated)
25425.7 Da
IEP (calculated)
6.395
GRAVY (calculated)
0.172
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTLEKRGDL FLLTLTGDDE HRFHPDTISS VLSLLEQAKS QSTRGSVLIT TAHGKFFSNG FDLAWAQAAG SQTGAVNRMH QMVESFKPVI AALFDLPMPT
101: IAALNGHAAA SGLMFALSHD YVFMRNDRGV LYMSEVDLGL PLPDYFAAMF AAKIGTSIAK RELLLSGKKI KGEEAVALGI VDSAAHDSVE GVVEATVSLG
201: ESLAAKKWNG EVYASIRKSL YPGLCAMLSV TDKIAASP
101: IAALNGHAAA SGLMFALSHD YVFMRNDRGV LYMSEVDLGL PLPDYFAAMF AAKIGTSIAK RELLLSGKKI KGEEAVALGI VDSAAHDSVE GVVEATVSLG
201: ESLAAKKWNG EVYASIRKSL YPGLCAMLSV TDKIAASP
001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL
Arabidopsis Description
ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.