Factsheet for PGSC0003DMT400041985

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
peroxisome 4
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400041985
PGSC0003DMT400041986

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	PGSC0003DMT400041985	AT4G14440.1	21798944
AT4G14430.1	PGSC0003DMT400041986	AT4G14440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	41.0	98.0
Solyc06g053670.1.1	Tomato	plastid	92.89	92.89
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	63.6	63.87
CDY47152	Canola	cytosol, mitochondrion, plastid	63.6	63.33
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	63.18	62.92
CDY12468	Canola	cytosol, mitochondrion, plastid	63.18	62.92
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	62.34	62.6
KRH21512	Soybean	cytosol, peroxisome, plastid	61.92	61.41
AT4G14430.1	Thale cress	peroxisome	61.09	60.83
CDY23155	Canola	peroxisome	56.9	57.14
CDY12773	Canola	peroxisome	56.9	57.14
Bra033483.1-P	Field mustard	peroxisome	56.9	57.14
AT4G14440.1	Thale cress	cytosol	56.49	56.72
KRH31723	Soybean	peroxisome, plasma membrane, plastid	55.65	53.41
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	53.56	51.61
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	50.63	48.79
HORVU1Hr1G081470.3	Barley	peroxisome	49.37	48.36
PGSC0003DMT400050550	Potato	peroxisome	45.61	47.6
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	48.54	47.54
Zm00001d038755_P001	Maize	extracellular, mitochondrion	48.12	47.52
TraesCS1D01G352100.1	Wheat	peroxisome	47.28	47.28
TraesCS1D01G352000.1	Wheat	peroxisome	48.12	47.13
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	48.12	47.13
GSMUA_Achr10P...	Banana	peroxisome	47.28	46.5
EES18539	Sorghum	mitochondrion, peroxisome, plastid	46.86	46.28
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	46.03	45.45
TraesCS3B01G154300.1	Wheat	mitochondrion	43.93	44.49
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	44.35	44.17
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	44.77	44.03
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	44.35	43.98
EES02280	Sorghum	cytosol	43.51	43.15
EES02279	Sorghum	mitochondrion, plastid	44.35	42.57
TraesCS3D01G137500.1	Wheat	cytosol	42.26	42.44
TraesCS3B01G154500.1	Wheat	cytosol	42.26	42.26
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	42.68	42.15
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	43.51	42.11
TraesCS3D01G137300.1	Wheat	plastid	45.19	41.7
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	41.42	41.42
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	41.84	38.02
HORVU1Hr1G082330.11	Barley	plastid	16.32	31.97
Zm00001d039741_P001	Maize	plastid	20.08	29.81

Protein Annotations

EnsemblPlants:PGSC0003DMT400041985	EnsemblPlantsGene:PGSC0003DMG400016285	EntrezGene:102592584	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84
PFAM:PF00378	PGSC:PGSC0003DMG400016285	RefSeq:XP_006350682.1	SEG:seg	SUPFAM:SSF52096	UniParc:UPI0002951AA0
UniProt:M1BCB2	MapMan:5.7.3.5.1	:	:	:	:

Description

Enoyl-CoA hydratase/isomerase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016285]

Coordinates

chr6:-:39731128..39732118

Molecular Weight (calculated)

25853.7 Da

IEP (calculated)

8.216

GRAVY (calculated)

0.078

Length

239 amino acids

Sequence
(BLAST)

001: MCTLEKTGNI FYLTLTGDDE HRLNPTLIAT LRSTLAQVKS QSVKGSVLIT KADGRFFSNG FDLKYAQAGG SEKAAADRLM NMVDLLKPVV ADFMSLPIPT
101: IAAVTGHAAA AGLLLAMSHD YITMRSDKGV LYMSELDIGM TLPDYFMAMI RSKIGSAGAR RDLVLKTAKI RGEEAVRMGM VDSAHGTAEE TVDAAVRLAE
201: ELGKKRWDGK VYAEIRKSLF PELCGLLGLK DVAVLPSHL

Best Arabidopsis Sequence Match ( AT4G14430.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGDGE HRFHPDTIAT ILSLLEQAKS QSTRGSILIT TANGKFFSNG FDLAWAQTAG SKTGAANRLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGLILALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI VDSAAYDSEE GVVVASVRLG
201: EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL

Arabidopsis Description

ECI2PEC12 [Source:UniProtKB/TrEMBL;Acc:A0A178UV55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.