Factsheet for TraesCS3A01G136600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G349200.1
TraesCS1A01G427400.1
TraesCS1B01G363700.1
TraesCS1B01G462300.1
TraesCS1D01G352000.1
TraesCS1D01G352100.1
TraesCS1D01G437100.1
TraesCS3A01G136600.1
TraesCS3A01G136700.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G154300.1
TraesCS3B01G154500.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G137300.1
TraesCS3D01G137500.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	TraesCS1A01G349200.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1B01G363700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352000.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352100.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136600.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154500.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137500.1	AT4G14440.1	21798944
AT4G14440.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G154300.1	Wheat	mitochondrion	92.12	94.07
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	92.12	91.36
TraesCS3D01G137300.1	Wheat	plastid	92.53	86.1
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	81.74	74.9
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	76.76	74.9
EES02280	Sorghum	cytosol	71.78	71.78
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	70.95	71.25
GSMUA_Achr10P...	Banana	peroxisome	53.53	53.09
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	49.79	50.42
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	48.96	49.58
AT4G14430.1	Thale cress	peroxisome	47.72	47.92
KRH01629	Soybean	cytosol, peroxisome, plastid	47.3	47.9
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	47.3	47.5
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	47.72	47.13
CDY47152	Canola	cytosol, mitochondrion, plastid	46.89	47.08
CDY12468	Canola	cytosol, mitochondrion, plastid	46.89	47.08
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	48.13	46.77
AT4G14440.1	Thale cress	cytosol	46.06	46.64
Bra033483.1-P	Field mustard	peroxisome	45.23	45.8
CDY23155	Canola	peroxisome	45.23	45.8
CDY12773	Canola	peroxisome	44.81	45.38
KRG89978	Soybean	cytosol	25.31	44.85
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	44.81	44.81
CDY16410	Canola	mitochondrion	44.4	44.77
PGSC0003DMT400041985	Potato	extracellular	43.98	44.35
Solyc06g053670.1.1	Tomato	plastid	43.98	44.35
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	43.98	44.17
Bra022473.1-P	Field mustard	cytosol	43.57	43.93
CDY67294	Canola	peroxisome	43.57	43.93
KRH21512	Soybean	cytosol, peroxisome, plastid	43.57	43.57
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	43.15	43.51
PGSC0003DMT400050550	Potato	peroxisome	41.08	43.23
KRH31723	Soybean	peroxisome, plasma membrane, plastid	43.98	42.57
AT1G65520.1	Thale cress	peroxisome	42.32	42.5
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	16.6	40.0
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	41.08	39.92
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	41.08	39.92
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	43.57	37.23
CDY19969	Canola	cytosol, nucleus, peroxisome	43.57	37.23
Solyc05g010720.2.1	Tomato	peroxisome	39.0	20.94

Protein Annotations

EnsemblPlants:TraesCS3A01G136600.1	EnsemblPlantsGene:TraesCS3A01G136600	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84	PFAM:PF00378
SEG:seg	SUPFAM:SSF52096	TIGR:cd06558	MapMan:5.7.3.5.1	:	:

Description

No Description!

Coordinates

chr3A:-:114047368..114048093

Molecular Weight (calculated)

25047.3 Da

IEP (calculated)

8.737

GRAVY (calculated)

0.215

Length

241 amino acids

Sequence
(BLAST)

001: MDNRNMCTVE KRGRVHLITL TGAGEHRLGP SLISALRSAV ATVRASPGAG ALVLAAEGKY FSNGFDQAWA STVPPHLHAS MRGAFRALVA DLLALPMPTV
101: AAVTGHAAAA GCALALAHDS VVMRASRGFL YMSEVDVGLK FADYFAELLR QKVPDGAARR DMVLGGNKMT AAEALRLGIV DAAADGGVED VVTAGVAAAE
201: GLAARGWDGE VVAEIRKAMW PAVWGKVKDH GAEAAVARPR L

Best Arabidopsis Sequence Match ( AT4G14440.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL

Arabidopsis Description

ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.