Factsheet for Bra039860.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033483.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	Bra033483.1-P	AT4G14440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47152	Canola	cytosol, mitochondrion, plastid	99.17	99.17
CDY12468	Canola	cytosol, mitochondrion, plastid	98.33	98.33
AT4G14430.1	Thale cress	peroxisome	86.25	86.25
Bra033483.1-P	Field mustard	peroxisome	79.58	80.25
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	64.17	64.71
PGSC0003DMT400041985	Potato	extracellular	62.92	63.18
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	62.5	63.03
Solyc06g053670.1.1	Tomato	plastid	61.67	61.92
KRH21512	Soybean	cytosol, peroxisome, plastid	59.17	58.92
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	23.33	56.0
KRH31723	Soybean	peroxisome, plasma membrane, plastid	55.83	53.82
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	51.67	50.0
GSMUA_Achr10P...	Banana	peroxisome	48.75	48.15
Bra022473.1-P	Field mustard	cytosol	47.5	47.7
Zm00001d038755_P001	Maize	extracellular, mitochondrion	47.92	47.52
EES18539	Sorghum	mitochondrion, peroxisome, plastid	47.92	47.52
TraesCS3B01G154300.1	Wheat	mitochondrion	46.67	47.46
HORVU3Hr1G026030.1	Barley	mitochondrion, peroxisome	47.92	47.33
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	47.5	47.3
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	45.83	46.03
HORVU1Hr1G081470.3	Barley	peroxisome	46.67	45.9
TraesCS3D01G137500.1	Wheat	cytosol	45.42	45.8
TraesCS1D01G352100.1	Wheat	peroxisome	45.42	45.61
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	46.25	45.49
TraesCS1B01G363700.1	Wheat	mitochondrion, peroxisome	46.25	45.49
TraesCS3B01G154500.1	Wheat	cytosol	45.0	45.19
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	45.0	45.0
TraesCS1D01G352000.1	Wheat	peroxisome	45.0	44.26
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	44.58	44.21
TraesCS3D01G137300.1	Wheat	plastid	47.5	44.02
EES02280	Sorghum	cytosol	44.17	43.98
Zm00001d008892_P001	Maize	cytosol, mitochondrion, peroxisome	43.75	43.39
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	50.0	42.55
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	43.33	42.11
TraesCS3A01G136700.1	Wheat	cytosol, mitochondrion, peroxisome	45.83	41.83
EES02279	Sorghum	mitochondrion, plastid	42.08	40.56
Zm00001d039741_P001	Maize	plastid	22.5	33.54
HORVU1Hr1G082330.11	Barley	plastid	16.67	32.79

Protein Annotations

Gene3D:3.90.226.10	MapMan:5.7.3.5.1	EnsemblPlantsGene:Bra039860	EnsemblPlants:Bra039860.1	EnsemblPlants:Bra039860.1-P	InterPro:ClpP/crotonase-like_dom_sf
InterPro:Enoyl-CoA_hydra/iso	GO:GO:0003674	GO:GO:0003824	GO:GO:0004165	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009062	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0080024	GO:GO:0080026
UniProt:M4FFI6	PFAM:PF00378	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84	SUPFAM:SSF52096	UniParc:UPI0002545830
SEG:seg	:	:	:	:	:

Description

AT4G14430 (E=6e-105) IBR10, ATECI2, ECI2, ECHIB, PEC12 | IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10); catalytic/ dodecenoyl-CoA delta-isomerase

Coordinates

chrA08:-:6244023..6244745

Molecular Weight (calculated)

25612.2 Da

IEP (calculated)

8.674

GRAVY (calculated)

0.169

Length

240 amino acids

Sequence
(BLAST)

001: MCTLEKRGNL FLLTLTGDNE HRFNPDAIAT ILSLLGQAKS QAKRGSVLIT TGQGKFFSNG FDLAWAQASG SLTGAAERLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGLMLALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFAAMV RSKIGTSAAR REVLLSGKKI RGEEAVALGI VDSAAHDSAE GVVEATVGLA
201: EKLAAKKWNG DVYASIRKSL YPELCEILGL KATIFATPKL

Best Arabidopsis Sequence Match ( AT4G14430.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGDGE HRFHPDTIAT ILSLLEQAKS QSTRGSILIT TANGKFFSNG FDLAWAQTAG SKTGAANRLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGLILALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI VDSAAYDSEE GVVVASVRLG
201: EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL

Arabidopsis Description

ECI2PEC12 [Source:UniProtKB/TrEMBL;Acc:A0A178UV55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.