Factsheet for TraesCS3A01G136700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G349200.1
TraesCS1A01G427400.1
TraesCS1B01G363700.1
TraesCS1B01G462300.1
TraesCS1D01G352000.1
TraesCS1D01G352100.1
TraesCS1D01G437100.1
TraesCS3A01G136600.1
TraesCS3A01G136700.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G154300.1
TraesCS3B01G154500.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G137300.1
TraesCS3D01G137500.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	TraesCS1A01G349200.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1B01G363700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352000.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352100.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136600.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154500.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137500.1	AT4G14440.1	21798944
AT4G14440.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G137500.1	Wheat	cytosol	84.79	93.7
TraesCS3B01G154500.1	Wheat	cytosol	83.65	92.05
HORVU3Hr1G026050.3	Barley	cytosol, mitochondrion, peroxisome	80.99	89.12
TraesCS3A01G136600.1	Wheat	cytosol, peroxisome, plastid	74.9	81.74
Zm00001d039408_P001	Maize	cytosol, mitochondrion, peroxisome	68.06	74.58
Os01t0205600-01	Rice	cytosol, peroxisome, plastid	69.96	74.49
EES02280	Sorghum	cytosol	66.92	73.03
GSMUA_Achr10P...	Banana	peroxisome	47.53	51.44
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	44.11	48.74
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	43.35	47.9
TraesCS1A01G349200.1	Wheat	mitochondrion, peroxisome	43.73	47.13
AT4G14430.1	Thale cress	peroxisome	41.83	45.83
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	41.83	45.83
CDY12468	Canola	cytosol, mitochondrion, plastid	41.83	45.83
CDY47152	Canola	cytosol, mitochondrion, plastid	41.83	45.83
KRH01629	Soybean	cytosol, peroxisome, plastid	40.68	44.96
Bra033483.1-P	Field mustard	peroxisome	40.3	44.54
CDY12773	Canola	peroxisome	39.92	44.12
AT4G14440.1	Thale cress	cytosol	39.92	44.12
CDY23155	Canola	peroxisome	39.92	44.12
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	41.06	43.55
PGSC0003DMT400050550	Potato	peroxisome	37.64	43.23
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	39.16	42.92
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	39.16	42.74
PGSC0003DMT400041985	Potato	extracellular	38.02	41.84
CDY67294	Canola	peroxisome	37.64	41.42
KRG89978	Soybean	cytosol	21.29	41.18
CDY16410	Canola	mitochondrion	37.26	41.0
KRH31723	Soybean	peroxisome, plasma membrane, plastid	38.78	40.96
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	38.4	40.73
Solyc06g053670.1.1	Tomato	plastid	36.88	40.59
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	36.88	40.59
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	38.02	40.32
Bra022473.1-P	Field mustard	cytosol	36.5	40.17
AT1G65520.1	Thale cress	peroxisome	36.5	40.0
KRH21512	Soybean	cytosol, peroxisome, plastid	36.5	39.83
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	14.45	38.0
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	37.64	35.11
CDY19969	Canola	cytosol, nucleus, peroxisome	37.64	35.11
Solyc05g010720.2.1	Tomato	peroxisome	34.22	20.04

Protein Annotations

EnsemblPlants:TraesCS3A01G136700.1	EnsemblPlantsGene:TraesCS3A01G136700	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF84	PFAM:PF00378
SEG:seg	SUPFAM:SSF52096	MapMan:5.7.3.5.1	:	:	:

Description

No Description!

Coordinates

chr3A:-:114238137..114238928

Molecular Weight (calculated)

27468.1 Da

IEP (calculated)

7.935

GRAVY (calculated)

0.176

Length

263 amino acids

Sequence
(BLAST)

001: MIRVNHSKSS RPCQTHSVTC CESPQMDTAS MCTVERRGRV HLITLTGAGE HRLGPALISA IRAAVAASPG AGALVLAAEG KYFSNGFDQA WARTVPPHLH
101: TAMSEAFRGL VADLLALPMP TVAAVTGHAA AAGCALALAH DSAVMRASRG FLYMSEVDAG IKIVDYFAEL LLQKVSDAAA RRDMLLRGDK MTAAEAVRRG
201: LVDAAADGGV DDVVAAAVAA AEGLAARGWD GEVVAEIRKA MWPAVWAKVK DYGADAAAPR PRL

Best Arabidopsis Sequence Match ( AT1G65520.1 )
(BLAST)

001: MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL

Arabidopsis Description

ECI1Enoyl-CoA delta isomerase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O04469]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.