Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G137500.1 | Wheat | cytosol | 95.4 | 95.8 |
| HORVU3Hr1G026050.3 | Barley | cytosol, mitochondrion, peroxisome | 92.05 | 92.05 |
| TraesCS3A01G136700.1 | Wheat | cytosol, mitochondrion, peroxisome | 92.05 | 83.65 |
| TraesCS3B01G154300.1 | Wheat | mitochondrion | 80.75 | 81.78 |
| EES02280 | Sorghum | cytosol | 73.64 | 73.03 |
| Os01t0205600-01 | Rice | cytosol, peroxisome, plastid | 74.9 | 72.47 |
| Zm00001d039408_P001 | Maize | cytosol, mitochondrion, peroxisome | 72.38 | 72.08 |
| GSMUA_Achr10P... | Banana | peroxisome | 52.72 | 51.85 |
| VIT_05s0049g00180.t01 | Wine grape | mitochondrion, peroxisome, plastid | 47.7 | 47.9 |
| VIT_05s0049g00160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 46.86 | 47.06 |
| AT4G14430.1 | Thale cress | peroxisome | 46.44 | 46.25 |
| TraesCS1B01G363700.1 | Wheat | mitochondrion, peroxisome | 46.44 | 45.49 |
| KRH01629 | Soybean | cytosol, peroxisome, plastid | 45.19 | 45.38 |
| CDY47152 | Canola | cytosol, mitochondrion, plastid | 45.19 | 45.0 |
| Bra039860.1-P | Field mustard | cytosol, mitochondrion, plastid | 45.19 | 45.0 |
| CDY12468 | Canola | cytosol, mitochondrion, plastid | 45.19 | 45.0 |
| GSMUA_Achr1P13680_001 | Banana | cytosol, peroxisome, plastid | 46.03 | 44.35 |
| AT4G14440.1 | Thale cress | cytosol | 43.1 | 43.28 |
| VIT_13s0019g00690.t01 | Wine grape | cytosol, peroxisome, plastid | 43.1 | 42.92 |
| Bra033483.1-P | Field mustard | peroxisome | 42.68 | 42.86 |
| CDY23155 | Canola | peroxisome | 42.68 | 42.86 |
| PGSC0003DMT400050550 | Potato | peroxisome | 41.0 | 42.79 |
| VIT_13s0019g00710.t01 | Wine grape | cytosol, peroxisome, plastid | 43.1 | 42.74 |
| CDY12773 | Canola | peroxisome | 42.26 | 42.44 |
| PGSC0003DMT400041985 | Potato | extracellular | 42.26 | 42.26 |
| KRG89978 | Soybean | cytosol | 23.43 | 41.18 |
| Solyc01g091520.2.1 | Tomato | cytosol, mitochondrion, peroxisome | 42.68 | 41.13 |
| Solyc06g053670.1.1 | Tomato | plastid | 41.0 | 41.0 |
| CDY16410 | Canola | mitochondrion | 41.0 | 41.0 |
| CDY67294 | Canola | peroxisome | 41.0 | 41.0 |
| PGSC0003DMT400033247 | Potato | cytosol, mitochondrion, peroxisome | 42.26 | 40.73 |
| CDY60945 | Canola | cytosol, mitochondrion, peroxisome, plastid | 40.59 | 40.59 |
| AT1G65520.1 | Thale cress | peroxisome | 40.59 | 40.42 |
| Bra022473.1-P | Field mustard | cytosol | 40.17 | 40.17 |
| PGSC0003DMT400041986 | Potato | cytosol, mitochondrion, peroxisome, plastid | 16.74 | 40.0 |
| KRH21512 | Soybean | cytosol, peroxisome, plastid | 39.75 | 39.42 |
| KRH31723 | Soybean | peroxisome, plasma membrane, plastid | 41.0 | 39.36 |
| Bra036189.1-P | Field mustard | cytosol, nucleus, peroxisome | 41.0 | 34.75 |
| CDY19969 | Canola | cytosol, nucleus, peroxisome | 41.0 | 34.75 |
| Solyc05g010720.2.1 | Tomato | peroxisome | 38.08 | 20.27 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G154500.1 | EnsemblPlantsGene:TraesCS3B01G154500 | Gene3D:3.90.226.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:ClpP/crotonase-like_dom_sf | InterPro:Enoyl-CoA_hydra/iso | PANTHER:PTHR11941 | PANTHER:PTHR11941:SF84 | PFAM:PF00378 |
| SEG:seg | SUPFAM:SSF52096 | MapMan:5.7.3.5.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:147183511..147184230
Molecular Weight (calculated)
24919.0 Da
IEP (calculated)
7.672
GRAVY (calculated)
0.169
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTANMCTVE RRGRVHLITL TGAGEHRLSP ALISAIRAAV AASPGAGALV MAAEGKYFSN GFDQAWARTV PPHLHTTMSE GFRGLVADLL ALPMPTVAAV
101: TGHAAAAGCA LALAHDSTVM RASRGFLYMS EVDAGIKIVD YFGELLRQKV PDAATRRDML LRGDKMTATE AVRRGVVDAA ADGGVDDVVA AAVAAAEGLA
201: ARGWDGEVVA EIRKAVWPAV WGKVKDYGTE AAAAARPRL
101: TGHAAAAGCA LALAHDSTVM RASRGFLYMS EVDAGIKIVD YFGELLRQKV PDAATRRDML LRGDKMTATE AVRRGVVDAA ADGGVDDVVA AAVAAAEGLA
201: ARGWDGEVVA EIRKAVWPAV WGKVKDYGTE AAAAARPRL
001: MCSLEKRDRL FILKLTGDGE HRLNPTLLDS LRSTINQIRS DPSFSQSVLI TTSDGKFFSN GYDLALAESN PSLSVVMDAK LRSLVADLIS LPMPTIAAVT
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL
101: GHASAAGCIL AMSHDYVLMR RDRGFLYMSE LDIELIVPAW FMAVIRGKIG SPAARRDVML TAAKVTADVG VKMGIVDSAY GSAAETVEAA IKLGEEIVQR
201: GGDGHVYGKM RESLLREVLI HTIGEYESGS SVVRSTGSKL
Arabidopsis Description
ECI1Enoyl-CoA delta isomerase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O04469]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.