Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- peroxisome 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14430.1 | CDY12773 | AT4G14440.1 | 21798944 |
| AT4G14430.1 | CDY23155 | AT4G14440.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47152 | Canola | cytosol, mitochondrion, plastid | 99.17 | 99.17 |
| Bra039860.1-P | Field mustard | cytosol, mitochondrion, plastid | 98.33 | 98.33 |
| AT4G14430.1 | Thale cress | peroxisome | 85.42 | 85.42 |
| CDY23155 | Canola | peroxisome | 80.42 | 81.09 |
| CDY12773 | Canola | peroxisome | 79.58 | 80.25 |
| VIT_05s0049g00180.t01 | Wine grape | mitochondrion, peroxisome, plastid | 63.33 | 63.87 |
| PGSC0003DMT400041985 | Potato | extracellular | 62.92 | 63.18 |
| VIT_05s0049g00160.t01 | Wine grape | mitochondrion, peroxisome, plastid | 62.5 | 63.03 |
| Solyc06g053670.1.1 | Tomato | plastid | 61.67 | 61.92 |
| KRH21512 | Soybean | cytosol, peroxisome, plastid | 58.75 | 58.51 |
| PGSC0003DMT400041986 | Potato | cytosol, mitochondrion, peroxisome, plastid | 23.33 | 56.0 |
| KRH31723 | Soybean | peroxisome, plasma membrane, plastid | 55.83 | 53.82 |
| CDY67294 | Canola | peroxisome | 50.0 | 50.21 |
| GSMUA_Achr1P13680_001 | Banana | cytosol, peroxisome, plastid | 51.67 | 50.0 |
| CDY16410 | Canola | mitochondrion | 48.75 | 48.95 |
| CDY60945 | Canola | cytosol, mitochondrion, peroxisome, plastid | 48.33 | 48.54 |
| GSMUA_Achr10P... | Banana | peroxisome | 48.33 | 47.74 |
| Zm00001d038755_P001 | Maize | extracellular, mitochondrion | 47.92 | 47.52 |
| EES18539 | Sorghum | mitochondrion, peroxisome, plastid | 47.92 | 47.52 |
| TraesCS3B01G154300.1 | Wheat | mitochondrion | 46.25 | 47.03 |
| HORVU3Hr1G026030.1 | Barley | mitochondrion, peroxisome | 47.5 | 46.91 |
| TraesCS3A01G136600.1 | Wheat | cytosol, peroxisome, plastid | 47.08 | 46.89 |
| HORVU1Hr1G081470.3 | Barley | peroxisome | 46.67 | 45.9 |
| HORVU3Hr1G026050.3 | Barley | cytosol, mitochondrion, peroxisome | 45.42 | 45.61 |
| TraesCS1A01G349200.1 | Wheat | mitochondrion, peroxisome | 46.25 | 45.49 |
| TraesCS1B01G363700.1 | Wheat | mitochondrion, peroxisome | 46.25 | 45.49 |
| TraesCS3D01G137500.1 | Wheat | cytosol | 45.0 | 45.38 |
| TraesCS1D01G352100.1 | Wheat | peroxisome | 45.0 | 45.19 |
| TraesCS3B01G154500.1 | Wheat | cytosol | 45.0 | 45.19 |
| Zm00001d039408_P001 | Maize | cytosol, mitochondrion, peroxisome | 45.0 | 45.0 |
| TraesCS1D01G352000.1 | Wheat | peroxisome | 45.0 | 44.26 |
| Os05t0529200-01 | Rice | cytosol, peroxisome, plastid | 44.58 | 44.21 |
| TraesCS3D01G137300.1 | Wheat | plastid | 47.08 | 43.63 |
| EES02280 | Sorghum | cytosol | 43.75 | 43.57 |
| Zm00001d008892_P001 | Maize | cytosol, mitochondrion, peroxisome | 43.33 | 42.98 |
| CDY19969 | Canola | cytosol, nucleus, peroxisome | 49.17 | 41.84 |
| TraesCS3A01G136700.1 | Wheat | cytosol, mitochondrion, peroxisome | 45.83 | 41.83 |
| Os01t0205600-01 | Rice | cytosol, peroxisome, plastid | 42.92 | 41.7 |
| EES02279 | Sorghum | mitochondrion, plastid | 41.67 | 40.16 |
| Zm00001d039741_P001 | Maize | plastid | 22.92 | 34.16 |
| HORVU1Hr1G082330.11 | Barley | plastid | 16.67 | 32.79 |
Protein Annotations
| EnsemblPlants:CDY12468 | EnsemblPlantsGene:GSBRNA2T00061768001 | Gene3D:3.90.226.10 | GO:A0A078FK23 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:ClpP/crotonase-like_dom_sf | InterPro:Enoyl-CoA_hydra/iso | PANTHER:PTHR11941 | PANTHER:PTHR11941:SF84 |
| PFAM:PF00378 | ProteinID:CDY12468 | ProteinID:CDY12468.1 | SEG:seg | SUPFAM:SSF52096 | UniParc:UPI0004EC9A85 |
| UniProt:A0A078FK23 | MapMan:5.7.3.5.1 | : | : | : | : |
Description
BnaC08g09570DBnaC08g09570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK23]
Coordinates
chrLK032022:-:860527..861544
Molecular Weight (calculated)
25683.3 Da
IEP (calculated)
8.677
GRAVY (calculated)
0.162
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTLEKRGNL FLLTLTGDNE HRFNPDAIAT ILSLLGQAKS QAKRGSVLIT TGHGKFFSNG FDLAWAQASG SLTGAAERLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGMMLALSHD YIFMRKDRGV LYMSEVDIGL SMPDYFAAMV RSKIGTSAAR REVLLSGKKI RGEEAVALGI VDSAAHDSAE GVVEATVSLA
201: EKLAAKKWNG DVYASIRKSL YPELCEILGL KATIFATPKL
101: IAALNGHAAA AGMMLALSHD YIFMRKDRGV LYMSEVDIGL SMPDYFAAMV RSKIGTSAAR REVLLSGKKI RGEEAVALGI VDSAAHDSAE GVVEATVSLA
201: EKLAAKKWNG DVYASIRKSL YPELCEILGL KATIFATPKL
001: MCTLEKRGDL FLLTLTGDGE HRFHPDTIAT ILSLLEQAKS QSTRGSILIT TANGKFFSNG FDLAWAQTAG SKTGAANRLH QMVESFKPVV AALLDLPMPT
101: IAALNGHAAA AGLILALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI VDSAAYDSEE GVVVASVRLG
201: EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL
101: IAALNGHAAA AGLILALSHD YVFMRKDRGV LYMSEVDIGL SMPDYFSALV RAKIGTSAAR RELLLSGKKI RGEEAVGLGI VDSAAYDSEE GVVVASVRLG
201: EKLAAKKWSG EVYASIRKSL YPELCGILGL ETRVFATPKL
Arabidopsis Description
ECI2PEC12 [Source:UniProtKB/TrEMBL;Acc:A0A178UV55]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.