Factsheet for TraesCS1D01G352100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G349200.1
TraesCS1A01G427400.1
TraesCS1B01G363700.1
TraesCS1B01G462300.1
TraesCS1D01G352000.1
TraesCS1D01G352100.1
TraesCS1D01G437100.1
TraesCS3A01G136600.1
TraesCS3A01G136700.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G154300.1
TraesCS3B01G154500.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G137300.1
TraesCS3D01G137500.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14430.1	TraesCS1A01G349200.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1B01G363700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352000.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS1D01G352100.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136600.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3A01G136700.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3B01G154500.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137300.1	AT4G14440.1	21798944
AT4G14430.1	TraesCS3D01G137500.1	AT4G14440.1	21798944
AT4G14440.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT4G14440.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G352000.1	Wheat	peroxisome	81.59	79.92
EES18539	Sorghum	mitochondrion, peroxisome, plastid	76.57	75.62
Os05t0529200-01	Rice	cytosol, peroxisome, plastid	72.38	71.49
Zm00001d038755_P001	Maize	extracellular, mitochondrion	70.29	69.42
GSMUA_Achr1P13680_001	Banana	cytosol, peroxisome, plastid	55.23	53.23
VIT_05s0049g00180.t01	Wine grape	mitochondrion, peroxisome, plastid	50.21	50.42
VIT_05s0049g00160.t01	Wine grape	mitochondrion, peroxisome, plastid	50.21	50.42
GSMUA_Achr10P...	Banana	peroxisome	50.21	49.38
KRH21512	Soybean	cytosol, peroxisome, plastid	47.7	47.3
Solyc06g053670.1.1	Tomato	plastid	47.28	47.28
PGSC0003DMT400041985	Potato	extracellular	47.28	47.28
KRH31723	Soybean	peroxisome, plasma membrane, plastid	48.12	46.18
AT4G14430.1	Thale cress	peroxisome	45.61	45.42
CDY47152	Canola	cytosol, mitochondrion, plastid	45.61	45.42
Bra039860.1-P	Field mustard	cytosol, mitochondrion, plastid	45.61	45.42
CDY12468	Canola	cytosol, mitochondrion, plastid	45.19	45.0
KRH01629	Soybean	cytosol, peroxisome, plastid	44.77	44.96
TraesCS3D01G137500.1	Wheat	cytosol	44.77	44.96
PGSC0003DMT400050550	Potato	peroxisome	42.68	44.54
TraesCS3D01G137300.1	Wheat	plastid	47.7	44.02
AT4G14440.1	Thale cress	cytosol	43.51	43.7
CDY16410	Canola	mitochondrion	42.68	42.68
CDY60945	Canola	cytosol, mitochondrion, peroxisome, plastid	42.68	42.68
KRG89978	Soybean	cytosol	24.27	42.65
CDY23155	Canola	peroxisome	42.26	42.44
Bra033483.1-P	Field mustard	peroxisome	42.26	42.44
CDY67294	Canola	peroxisome	42.26	42.26
PGSC0003DMT400041986	Potato	cytosol, mitochondrion, peroxisome, plastid	17.57	42.0
Bra022473.1-P	Field mustard	cytosol	41.84	41.84
CDY12773	Canola	peroxisome	41.42	41.6
VIT_13s0019g00710.t01	Wine grape	cytosol, peroxisome, plastid	40.59	40.25
VIT_13s0019g00690.t01	Wine grape	cytosol, peroxisome, plastid	40.17	40.0
AT1G65520.1	Thale cress	peroxisome	40.17	40.0
Solyc01g091520.2.1	Tomato	cytosol, mitochondrion, peroxisome	39.75	38.31
PGSC0003DMT400033247	Potato	cytosol, mitochondrion, peroxisome	39.75	38.31
Bra036189.1-P	Field mustard	cytosol, nucleus, peroxisome	42.68	36.17
CDY19969	Canola	cytosol, nucleus, peroxisome	42.68	36.17
Solyc05g010720.2.1	Tomato	peroxisome	41.0	21.83

Protein Annotations

EnsemblPlants:TraesCS1D01G352100.1	EnsemblPlantsGene:TraesCS1D01G352100	Gene3D:3.90.226.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	PANTHER:PTHR11941	PANTHER:PTHR11941:SF106	PFAM:PF00378
SEG:seg	SUPFAM:SSF52096	TIGR:cd06558	MapMan:5.7.3.5.1	:	:

Description

No Description!

Coordinates

chr1D:+:437410723..437411442

Molecular Weight (calculated)

25320.8 Da

IEP (calculated)

9.313

GRAVY (calculated)

0.161

Length

239 amino acids

Sequence
(BLAST)

001: MCTLEQRGRV FVLTLTGDGE HRLGHPLIAS IRSALASVLA AAQAQPQGPG AALVTVAEGR FFSNGLDVGR AGGSRARLRE LVDAFRPIAA DLLALPMPTV
101: AAVTGHASAA GLLLALCHDY RLMRADRGVL YMGLPLPPYV ARLLRAKITQ AHALRDVALR GRKLRAPEAR EMGIVDAVCA GAPETAAEAV KLAEQLAARE
201: WDGAVYASIR VSTFPDACRA VGIAVESDEE KSRHFASRL

Best Arabidopsis Sequence Match ( AT4G14440.1 )
(BLAST)

001: MCTLEKRGDL FLLTLTGEDE HRFHPDTIAS VLSLLEQAKS QSTKGSVLIT TGHGKFFSNG FDLAWAQSAG HGAIKRMHQM VKSFKPVLAA LLDLPMPTIA
101: ALNGHAAASG LMFALSHDYV FMRKDRGVLY MSEVDIGLPV PDYFSALVVA KVGSGIARRE LLLSGKKLKG EEAVALGIVD SAAHDSAEGV VEATVSLGES
201: LAAKKWNGEV YATIRKSLYP ELCRMVDLTA NNLATHNL

Arabidopsis Description

ECI3Enoyl-CoA delta isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:O23300]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.