Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P24480_001 | Banana | cytosol | 60.72 | 62.4 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 64.02 | 62.34 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 23.54 | 59.47 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 44.53 | 59.05 |
| KRH21985 | Soybean | cytosol | 60.27 | 58.09 |
| KRH55099 | Soybean | nucleus | 58.77 | 57.82 |
| KRH26223 | Soybean | nucleus | 58.02 | 57.25 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 61.02 | 57.16 |
| KRH27330 | Soybean | cytosol | 59.52 | 56.88 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 58.92 | 56.71 |
| PGSC0003DMT400054803 | Potato | cytosol | 24.74 | 56.12 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 59.67 | 56.06 |
| KRH22291 | Soybean | plastid | 48.58 | 55.48 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 55.62 | 55.37 |
| CDY02514 | Canola | cytosol, plastid | 55.62 | 55.37 |
| Bra038116.1-P | Field mustard | cytosol | 54.57 | 55.32 |
| CDY25865 | Canola | cytosol | 54.42 | 55.17 |
| CDY25722 | Canola | cytosol, plastid | 55.02 | 55.02 |
| CDY45930 | Canola | cytosol | 54.27 | 54.93 |
| CDY61202 | Canola | cytosol | 54.27 | 53.95 |
| Bra000267.1-P | Field mustard | cytosol | 54.27 | 53.87 |
| CDY51514 | Canola | cytosol | 52.77 | 52.62 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.14 | 52.61 |
| PGSC0003DMT400032362 | Potato | cytosol | 55.17 | 52.57 |
| CDY42827 | Canola | cytosol | 52.77 | 52.46 |
| AT1G53300.1 | Thale cress | cytosol | 54.87 | 52.36 |
| Solyc07g062580.2.1 | Tomato | cytosol | 54.87 | 52.21 |
| AT2G42580.1 | Thale cress | cytosol | 53.97 | 52.1 |
| AT3G58620.1 | Thale cress | cytosol | 52.92 | 51.76 |
| Bra004709.1-P | Field mustard | cytosol | 50.97 | 51.75 |
| CDY55390 | Canola | cytosol | 51.87 | 51.72 |
| Bra007405.1-P | Field mustard | cytosol | 52.02 | 51.56 |
| CDY49237 | Canola | cytosol | 51.42 | 51.42 |
| CDX71941 | Canola | cytosol | 51.57 | 51.04 |
| CDY34224 | Canola | cytosol | 5.1 | 49.28 |
| PGSC0003DMT400054902 | Potato | cytosol | 21.74 | 48.49 |
| KRH27037 | Soybean | nucleus | 48.88 | 48.3 |
| PGSC0003DMT400054904 | Potato | cytosol | 42.73 | 47.19 |
| Solyc10g007240.1.1 | Tomato | cytosol | 40.93 | 45.96 |
| AT3G14950.1 | Thale cress | cytosol | 49.92 | 45.62 |
| PGSC0003DMT400054911 | Potato | cytosol | 35.53 | 45.49 |
| Bra023795.1-P | Field mustard | cytosol | 6.0 | 45.45 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 41.83 | 45.37 |
| Solyc10g007230.1.1 | Tomato | cytosol | 40.03 | 44.8 |
| Solyc10g007220.1.1 | Tomato | cytosol | 32.98 | 43.56 |
| Bra027292.1-P | Field mustard | cytosol | 47.53 | 43.19 |
| CDX97619 | Canola | cytosol | 46.63 | 42.9 |
| Solyc10g007250.1.1 | Tomato | cytosol | 17.69 | 42.29 |
| CDX98517 | Canola | cytosol | 45.88 | 42.27 |
| PGSC0003DMT400054909 | Potato | cytosol | 25.94 | 41.99 |
| CDY20095 | Canola | nucleus | 45.43 | 41.62 |
| CDY32327 | Canola | cytosol | 45.28 | 41.43 |
| Solyc10g007420.2.1 | Tomato | cytosol | 26.39 | 41.41 |
| Bra021583.1-P | Field mustard | nucleus | 45.43 | 40.08 |
| PGSC0003DMT400091014 | Potato | nucleus | 35.38 | 38.88 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 21.89 | 38.62 |
| CDY40820 | Canola | mitochondrion | 16.04 | 38.08 |
| CDY34222 | Canola | cytosol | 17.24 | 37.34 |
| CDY34223 | Canola | cytosol | 17.84 | 36.5 |
| Bra023793.1-P | Field mustard | cytosol | 22.34 | 36.16 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 17.54 | 35.89 |
| GSMUA_Achr11P... | Banana | plastid | 30.28 | 34.53 |
| GSMUA_Achr3P24690_001 | Banana | cytosol | 34.93 | 34.32 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 8.25 | 24.12 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:GSMUA_Achr10G21720_001 | EnsemblPlants:GSMUA_Achr10P21720_001 | EnsemblPlants:GSMUA_Achr10T21720_001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR013766 |
| InterPro:IPR019734 | UniProt:M0RK97 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF13174 | PFAM:PF13414 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF374 | SMART:SM00028 | SUPFAM:SSF48452 |
| SUPFAM:SSF52833 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI000296F49C | SEG:seg | : | : | : |
Description
TPR repeat-containing thioredoxin TTL1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G21720_001]
Coordinates
chr10:+:27199868..27203982
Molecular Weight (calculated)
71885.2 Da
IEP (calculated)
9.027
GRAVY (calculated)
-0.328
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLVDASGA RTHKSSSEPA LDSVSDRLRT ALSFEANKPD SKDFPDLSSP VSPLPTRPAA TSSSSGSSGS VSGKPASHAD SKRSDLGLSG RRSHSGELLL
101: APNEPIPGAM ETRSSKPGHR RSGSVPLIYT GGSFSSGSTS GSGSGSSSAS SPVTNVLPSG NICPSGKIVK TGMMSRSAVR ADVLGSGTGN YGHGNIEVKR
201: VGNEQYRKGQ FAEALKLYDR AIALCPDSAV CRSNRAAALT GLRRLGEAVK ECEEALLLDP AFGRAHQRLA SLLLRLGQVE NARRHLVSAG PHPDPVELQK
301: LQAVERHLNR CADARKFGDW KTALKETDAA IAEGADSSLL LMASKAEAHL RLHQLEEADL AISAASKLES LSSSSSNSKF FGMLSNSYMY VVRAQVEMVR
401: GRFENAVAAA EKARQVDPGN VEVSMMLNNV RSVSRSRVLG NELFNSGKFV EASLAYGEGL KYDPSNPVLY CNRAACRSKL GQWEKTIEDC NQALVIQPDY
501: AKALLRRAAS YTKLERWTEA VRDYEVLRKE LPGDTEVAEA LFHARVALKT SRGEEVSNLK FGGEVEEIKG FEQFQAAITL PGVSVVHFMV AFNHNCNQIT
601: PFVNALCTRY PSVNFLKVDV NAIPAVGEAE NVRMVPTFKI YKNGAKVKEL ICPNQQALEY SLRHYGL
101: APNEPIPGAM ETRSSKPGHR RSGSVPLIYT GGSFSSGSTS GSGSGSSSAS SPVTNVLPSG NICPSGKIVK TGMMSRSAVR ADVLGSGTGN YGHGNIEVKR
201: VGNEQYRKGQ FAEALKLYDR AIALCPDSAV CRSNRAAALT GLRRLGEAVK ECEEALLLDP AFGRAHQRLA SLLLRLGQVE NARRHLVSAG PHPDPVELQK
301: LQAVERHLNR CADARKFGDW KTALKETDAA IAEGADSSLL LMASKAEAHL RLHQLEEADL AISAASKLES LSSSSSNSKF FGMLSNSYMY VVRAQVEMVR
401: GRFENAVAAA EKARQVDPGN VEVSMMLNNV RSVSRSRVLG NELFNSGKFV EASLAYGEGL KYDPSNPVLY CNRAACRSKL GQWEKTIEDC NQALVIQPDY
501: AKALLRRAAS YTKLERWTEA VRDYEVLRKE LPGDTEVAEA LFHARVALKT SRGEEVSNLK FGGEVEEIKG FEQFQAAITL PGVSVVHFMV AFNHNCNQIT
601: PFVNALCTRY PSVNFLKVDV NAIPAVGEAE NVRMVPTFKI YKNGAKVKEL ICPNQQALEY SLRHYGL
001: MSHSRRLSLE PAIDSITGRF RDLQRNDDDV NKPDFRELDL GSPVSTLMPR GSASSSAAAT PTSSSGSSGS ASGKPSVSSQ MAKRLDDAYK SHSGELSSPG
101: SGMPTTTRIL KPGHRRSSST GTPLIFSGSS FTSATSHTSP QGGGSGATSA VSPNTGVLPA GNICPSGRIL KTGMASRTSS RTETLCTGTG NYGHGNVVRS
201: GGGGGTSGKA VRVAENGENP EELKRMGNDM YRRGSFSEAL SLYDRAILIS PGNAAYRSNR AAALTALRRL GEAVKECLEA VRIDPSYSRA HQRLASLYLR
301: LGEAENARRH ICFSGQCPDQ ADLQRLQTLE KHLRRCWEAR KIGDWKTAIK ETDAAIANGA DSSPQLVACK AEAFLRLKQI EDSDFCVSCI PRLDHHYHSQ
401: PQVKLFGMVV EAYVLCIQAQ VDMALGRFEN AVVKAERAAM LDQTNPEVVS VLNNVKMVVR ARTRGNELFS SGRFSEACVA YGDGLKQDDS NSVLYCNRAA
501: CWYKLGLWEK SVEDCNHALK SQPSYIKALL RRAASYGKLG RWEDAVKDYE FLRRELPGDS EVAESLERAK TVLMNRSQES KSLGFNNEVE AVSTLDKFKK
601: SVALPGVSVF HFKSSSNRQC EEISPFINTL CLRYPLVHFF MVDVEESMAL AKAESIRKVP TFKMYKNGDK VKEMVCPSHQ FLEDSIKHFL L
101: SGMPTTTRIL KPGHRRSSST GTPLIFSGSS FTSATSHTSP QGGGSGATSA VSPNTGVLPA GNICPSGRIL KTGMASRTSS RTETLCTGTG NYGHGNVVRS
201: GGGGGTSGKA VRVAENGENP EELKRMGNDM YRRGSFSEAL SLYDRAILIS PGNAAYRSNR AAALTALRRL GEAVKECLEA VRIDPSYSRA HQRLASLYLR
301: LGEAENARRH ICFSGQCPDQ ADLQRLQTLE KHLRRCWEAR KIGDWKTAIK ETDAAIANGA DSSPQLVACK AEAFLRLKQI EDSDFCVSCI PRLDHHYHSQ
401: PQVKLFGMVV EAYVLCIQAQ VDMALGRFEN AVVKAERAAM LDQTNPEVVS VLNNVKMVVR ARTRGNELFS SGRFSEACVA YGDGLKQDDS NSVLYCNRAA
501: CWYKLGLWEK SVEDCNHALK SQPSYIKALL RRAASYGKLG RWEDAVKDYE FLRRELPGDS EVAESLERAK TVLMNRSQES KSLGFNNEVE AVSTLDKFKK
601: SVALPGVSVF HFKSSSNRQC EEISPFINTL CLRYPLVHFF MVDVEESMAL AKAESIRKVP TFKMYKNGDK VKEMVCPSHQ FLEDSIKHFL L
Arabidopsis Description
TTL3Inactive TPR repeat-containing thioredoxin TTL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIN1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.