Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 71.05 | 71.05 |
| GSMUA_Achr7P24870_001 | Banana | cytosol | 64.91 | 70.48 |
| GSMUA_Achr3P31840_001 | Banana | cytosol | 71.93 | 70.09 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 66.67 | 68.47 |
| KRH27369 | Soybean | cytosol | 68.42 | 68.42 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 68.42 | 68.42 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 65.79 | 67.57 |
| PGSC0003DMT400073258 | Potato | cytosol | 67.54 | 67.54 |
| CDY24097 | Canola | cytosol | 66.67 | 66.67 |
| Bra039670.1-P | Field mustard | cytosol | 66.67 | 66.67 |
| Solyc02g072100.2.1 | Tomato | cytosol | 65.79 | 65.79 |
| CDY60203 | Canola | cytosol | 64.91 | 64.91 |
| CDY24099 | Canola | cytosol | 64.91 | 64.91 |
| AT1G53400.1 | Thale cress | cytosol | 64.91 | 64.91 |
| PGSC0003DMT400018283 | Potato | cytosol | 64.04 | 63.48 |
| Bra038123.1-P | Field mustard | cytosol | 63.16 | 63.16 |
| Solyc07g062290.2.1 | Tomato | cytosol | 61.4 | 60.87 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 35.09 | 41.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P15540_001 | EnsemblPlants:GSMUA_Achr2T15540_001 | EnsemblPlantsGene:GSMUA_Achr2G15540_001 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | UniParc:UPI0002965723 | UniProt:M0S895 | MapMan:35.2 | : |
Description
Putative Ubiquitin domain-containing protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15540_001]
Coordinates
chr2:-:16805682..16808275
Molecular Weight (calculated)
12801.2 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.605
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCGGSSRKK AQEINKKLKK PEAWTHAQPL TEAQLKKMRE EFWDTAPYYG GEKEIWDALR AAAESDLKFA QTIVDSAGIV VTSADMTTCY DERGAKYELP
101: KFVLSEPINL IRDS
101: KFVLSEPINL IRDS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.