Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P31840_001 | Banana | cytosol | 88.57 | 79.49 |
| KXG22390 | Sorghum | cytosol | 83.81 | 77.88 |
| PGSC0003DMT400071514 | Potato | cytosol, mitochondrion, nucleus | 80.0 | 75.68 |
| TraesCS1D01G352200.1 | Wheat | cytosol | 80.95 | 75.22 |
| EES03565 | Sorghum | cytosol | 80.95 | 75.22 |
| TraesCS1A01G349000.1 | Wheat | cytosol | 80.95 | 75.22 |
| HORVU1Hr1G081490.1 | Barley | cytosol | 80.0 | 74.34 |
| Zm00001d043565_P001 | Maize | cytosol | 80.0 | 74.34 |
| Solyc03g006020.2.1 | Tomato | cytosol, mitochondrion, nucleus | 78.1 | 73.87 |
| VIT_10s0003g01710.t01 | Wine grape | cytosol, mitochondrion, nucleus | 80.0 | 73.68 |
| Os05t0529400-01 | Rice | cytosol | 79.05 | 73.45 |
| HORVU3Hr1G069400.1 | Barley | cytosol | 78.1 | 72.57 |
| Os01t0731000-01 | Rice | plasma membrane | 76.19 | 70.8 |
| Zm00001d039399_P001 | Maize | cytosol, nucleus, plastid | 49.52 | 70.27 |
| VIT_19s0014g01000.t01 | Wine grape | cytosol | 76.19 | 70.18 |
| KRH27369 | Soybean | cytosol | 76.19 | 70.18 |
| CDY60203 | Canola | cytosol | 74.29 | 68.42 |
| PGSC0003DMT400018283 | Potato | cytosol | 74.29 | 67.83 |
| AT1G53400.1 | Thale cress | cytosol | 73.33 | 67.54 |
| CDY24097 | Canola | cytosol | 72.38 | 66.67 |
| Bra039670.1-P | Field mustard | cytosol | 72.38 | 66.67 |
| Bra038123.1-P | Field mustard | cytosol | 72.38 | 66.67 |
| PGSC0003DMT400073258 | Potato | cytosol | 71.43 | 65.79 |
| Solyc07g062290.2.1 | Tomato | cytosol | 71.43 | 65.22 |
| Solyc02g072100.2.1 | Tomato | cytosol | 70.48 | 64.91 |
| GSMUA_Achr2P15540_001 | Banana | cytosol | 70.48 | 64.91 |
| CDY24099 | Canola | cytosol | 70.48 | 64.91 |
| TraesCS3B01G315300.2 | Wheat | cytosol | 78.1 | 63.57 |
| TraesCS3A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 80.0 | 58.33 |
| TraesCS1B01G363900.2 | Wheat | cytosol | 80.95 | 58.22 |
| TraesCS3D01G281600.2 | Wheat | cytosol, endoplasmic reticulum, plastid | 79.05 | 57.64 |
| Zm00001d038753_P002 | Maize | cytosol | 64.76 | 45.33 |
| CDY62073 | Canola | cytosol, mitochondrion, nucleus | 39.05 | 42.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P24870_001 | EnsemblPlants:GSMUA_Achr7T24870_001 | EnsemblPlantsGene:GSMUA_Achr7G24870_001 | Gene3D:1.20.225.20 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0043130 | InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | InterPro:IPR038169 | PANTHER:PTHR13609 |
| PANTHER:PTHR13609:SF13 | PFAM:PF16455 | UniParc:UPI000294B2A3 | UniProt:M0TKH3 | MapMan:35.2 | : |
Description
Ubiquitin domain-containing protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G24870_001]
Coordinates
chr7:-:26697939..26700591
Molecular Weight (calculated)
12053.4 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.647
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVENTKKLR KPKPWKHNEP ITRTHLKQMR DEFWDTAPHY GGQKEIWDAL RAAAEADINL AQAIVDSAGI IISNADMTLC YDERGAKYEL PKYVLSEPTN
101: LIRDS
101: LIRDS
001: MGCAGSTQSQ ADGSVKKIRK PKPWKHTQPI TKAELMKLRE EFWDTAPHYG GRKEIWDALR AAAEADISLA QAIVDSAGVI VQNTDLTVCY DERGAKYELP
101: KYVLSEPTNL EEEN
101: KYVLSEPTNL EEEN
Arabidopsis Description
F12M16.29 [Source:UniProtKB/TrEMBL;Acc:Q9MAG2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.